Query= MSMg01no419_i01.b1 MSMg01no419_i01.b1 CHROMAT_FILE:
MSMg01no419_i01.b1 PHD_FILE: MSMg01no419_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:04 2005
(298 letters)
>mm_chr4_91729620_91730315
Length = 696
Score = 524 bits (271), Expect = e-153
Identities = 290/299 (96%), Gaps = 8/299 (2%)
Strand = Plus / Minus
Query: 1 gctaaatcctttcaagttaaatagaaaggttggggattgaaaagaaataatctcactctg 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 494 gctaaatcctttcaagttaaatagaaaggtaggggattgaaaagaaataatctcactctg 435
Query: 61 tcataaaacatgagttctaaccaggtaatcacttgttcaaacctctctctgcaggagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcataaaacatgagttctaaccaggtaatcacttgttcaaacctctctctgcaggagatg 375
Query: 121 ccattgacagagctgccctgctctctatacaaattctctgggatanggcaagcattacca 180
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 374 ccattgacagagctgccctgctctctatacaaattctct--gata-ggcaagcattacca 318
Query: 181 ttgttatttagcatatatattgctcttcacaatcatatattgcctaatcttagcagtaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgttatttagcatatatattgctcttcacaatcatatattgcctaatcttagcagtaca 258
Query: 241 ttctcagtgagcatttt---atctctatttgcagatgaaaagaatacaatacacaaagg 296
||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttctcagtgagca--ttaccatctctatttgcagatgaaaagaatacaatacacaaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 696
Length adjustment: 9
Effective length of query: 289
Effective length of database: 687
Effective search space: 198543
Effective search space used: 198543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_i01.g1 MSMg01no419_i01.g1 CHROMAT_FILE:
MSMg01no419_i01.g1 PHD_FILE: MSMg01no419_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:04 2005
(203 letters)
>mm_chr4_91578384_91578987
Length = 604
Score = 329 bits (170), Expect = 8e-95
Identities = 191/202 (94%), Gaps = 9/202 (4%)
Strand = Plus / Plus
Query: 1 tatatgtgttgaaaacaattgagtttagcaacaaatttttattatataattttgttaaaa 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatatgttgaaaacaattgagtttagcaacaaatttttattatataattttgttaaaa 260
Query: 61 ctatattgcttgctatgttaagattccagtttagttaaatgactacactaggttaagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatattgcttgctatgttaagattccagtttagttaaatgactacactaggttaagttt 320
Query: 121 taatatttt----cagaaaaagagagaggagaaaaaaaggaaaaaaa-caattttgtaga 175
||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 taata----agggcagaaaaagagagaggagaaaaaaaggaaaaaaaacaattttgtaga 376
Query: 176 gtaatagcagcatcccccttat 197
|||||||||||||||||||||
Sbjct: 377 ataatagcagcatcccccttat 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 604
Length adjustment: 8
Effective length of query: 195
Effective length of database: 596
Effective search space: 116220
Effective search space used: 116220
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
