Query= MSMg01no419_i06.b1 MSMg01no419_i06.b1 CHROMAT_FILE:
MSMg01no419_i06.b1 PHD_FILE: MSMg01no419_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:05 2005
(388 letters)
>mm_chr4_12988417_12989204
Length = 788
Score = 727 bits (376), Expect = 0.0
Identities = 385/388 (99%)
Strand = Plus / Minus
Query: 1 aacaggaaaagagaggctctaggcttagaatgggcttttgaaactttgaagtccacccta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 767 aacaggaaaagagaggctctaggcttagaatgggcttttgaaactttgaagttcacccta 708
Query: 61 gtgacacacttctttcaacaaggccacaccctctaatcctttcaaatagcactacttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gtgacacacttctttcaacaaggccacaccctctaatcctttcaaatagcactacttcct 648
Query: 121 gctgaccaagtattcacatctgtgagtctatgcaggctattctcattgaaaccacaacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gctgaccaagtattcacatctgtgagtctatgcaggctattctcattgaaaccacaacac 588
Query: 181 caacaaaactggtaaaatgacataaaatccatgtggaaagctcctaacaatgattattca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 caacaaaactggtaaaatgacataaaatccatgtggaaagctcctaacaatgattattca 528
Query: 241 catattatgtatcctataaaattagttataacgattccaacagtctttgaacgaatagtt 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 catagtaggtatcctataaaattagttataacgattccaacagtctttgaacgaatagtt 468
Query: 301 tgagctatgatggcaaggagttgctggtaattactaataatgccacttttcacccactgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgagctatgatggcaaggagttgctggtaattactaataatgccacttttcacccactgc 408
Query: 361 cttagtactctttatatattactgctat 388
||||||||||||||||||||||||||||
Sbjct: 407 cttagtactctttatatattactgctat 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_i06.g1 MSMg01no419_i06.g1 CHROMAT_FILE:
MSMg01no419_i06.g1 PHD_FILE: MSMg01no419_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:05 2005
(522 letters)
>mm_chr4_12809144_12810063
Length = 920
Score = 978 bits (506), Expect = 0.0
Identities = 518/522 (99%), Gaps = 2/522 (0%)
Strand = Plus / Plus
Query: 1 ctaacatgtgcttctaatccttgttcagtgaatgagagggagtgtctgtcattttctgag 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ctaacatgtgcttctaatccttgttcagtgaatgagagggagcgtctgtcattttctgag 260
Query: 61 caagtactctttggtcaagaaaaaggcattgatctcaaaatgcttctatttttctaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtactctttggtcaagaaaaaggcattgatctcaaaatgcttctatttttctaagca 320
Query: 121 gcaggtataaaaaatgaatttaatagtaaataaattatcttctgaacaaacccaagtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggtataaaaaatgaatttaatagtaaataaattatcttctgaacaaacccaagtaaa 380
Query: 181 aataccaaataatagtcaatgtataatattgcttatgaaataaaaacaaggctcgagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataccaaataatagtcaatgtataatattgcttatgaaataaaaacaaggctcgagtct 440
Query: 241 ctaggaatatctctatcacgatgctctatcaatatggaatgaaacaataattacttgctt 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggaatatc-c-atcacgatgctctatcaatatggaatgaaacaataattacttgctt 498
Query: 301 ctccaacttaatttagacgaagttaaaaggtatgcactcaaatcaattgtttagttttcc 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctccaacttaatttagactaagttaaaaggtatgcactcaaatcaattgtttagttttcc 558
Query: 361 ttttgtttgttgtaaccaatgggtttagcattaacatactcacaattttgactggacata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttgtttgttgtaaccaatgggtttagcattaacatactcacaattttgactggacata 618
Query: 421 acatacatatgcgaagatcccagggcctggaccaccaaccaaagaatacacatggaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acatacatatgcgaagatcccagggcctggaccaccaaccaaagaatacacatggaacaa 678
Query: 481 cccatggtgctggccacatatgttgcagaggatggctttgtt 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cccatggtgctggccacatatgttgcagaggatggctttgtt 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 920
Length adjustment: 10
Effective length of query: 512
Effective length of database: 910
Effective search space: 465920
Effective search space used: 465920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
