BAC Information

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BAC

Clone NameMSMg01-419O10
Chromosome4 (Build37)
Map Location 108,897,508 - 108,897,752
singlet/doubletsinglet
Overlap genenone
Upstream geneZyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9
Downstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419O10.T7 (MSMg01no419_o10.b1)MSMg01-419O10.TJ (MSMg01no419_o10.g1)
ACCAG514893AG514894
length786751
length of high quality
(start - end)
183 (140 - 322)245 (65 - 309)
definitionCHROMAT_FILE: MSMg01no419_o10.b1 PHD_FILE: MSMg01no419_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:34 2005CHROMAT_FILE: MSMg01no419_o10.g1 PHD_FILE: MSMg01no419_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATCTTAAATTTTGGGCGCTAAAAGAGNNNCTATTCATCCAGAATC
CGNGGAAANNNNTTTTTTCTCCCCCCACCACCTCCTCCTAATCCTCCTTC
CTCCCCTCCGGTTTCTCCCTCTTCCCCTTTCTTCAGTTTTATGAGACAGA
ATCTTACTATGTGGTCCTGGCTGGCCTGAAATTTGCTGTGTAGACCAGGC
CGGCCTTGAACTCACAGAGAGACCACTCTGCCTTCGGAGTGCTGGGATTA
AAGATGTGCTCCACCACTCCCAGTCTCATTTTTTTTTTTTTTTTTTCCTT
TAAGAAAGGCTGTGCCAGTATTTTAAATCAAAATTTTGGGTAGATTGAGT
TATGTTTTTAGGAAGCTTTTGTGCGTGCGTGTGTATGGTGTGCCCCCCTT
CCTTCTTCTCCCCCCCCCTTTTCTCTTCCCTTCTTCTCCTTTTTCCCCTT
TTTTTCCCTTTTCTCCCCCCTTTTCCTTTCCCCCCCCCCTCTTTTTTTCC
TCTTTCCCCCCTTTCCCCTTTTTTTTTTCTTTTTCTTTCCCCTCCCCCCT
TCCCCTCTTCCCTTTTCTTCCCCCCCTTCTCTTCTCCTCTTCCCCTTCTC
TTTCTTCTCTCCCCTTTTTTCCCTTTCCCTCACCCCCTCTTTCTTCCCCT
TTTCCCCCCCCTTTCCTCTCTTTTTTCCTCCCCCTCTTTTTCTTTTTTTC
TTTCCCCCCCCTTCTCTTCTCCCTTTCCCTCTTTTTTTACCCTCCTCTTC
TTTTATATCTTCTCTCTTNTATTCCTTTCCCCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGTTTCTTTCCCCCAGATTTTTATATCCCCACAAT
GGTGGCTGCTGTGGTCATTAGCTTTCCCTCCATATCTGTCTGTGTTGTCA
GTCTGATGATCCTCCCATTTTCTCTGTCAACACTCCTGCCTATGGTAATG
TGCCAGTCCCTGGGAAAGTTCTGGGTTTCTACATGCTCATGTTGTTCCAA
CGGTCACTGGTATTATTGTCCGCAGCCACAGGACACTTGGCGGCCTTCCA
CAGTGACCATTTTTTTCTTTATGAAGAAACAAGACCTGAGCTTGACAAGA
TCCTCTGCTACCATGCATTGTGGAACTTTGGGGAAGTGACCTTACCTCTC
TGGGACTCAGTTTCCCCATCTCTACAAAGAAGGTGCCTTCTAAGGGCTCC
ACACCCTCTCAGTTCTGTGATGTTCTGTGGCCTGGAGTACTCTAAAGGAA
AGTAGAAAGCAAGGACCTGTATCTGTATCTGCCTCACGGAGGCTTTTGGA
TTAGATGACCTTTCCAGACCCTTTTGCTTTTGACATCAAAAGTATGTAAG
ATGTCCTTTCTTGAAAACTGCCAAGCTGGAAGGCCTCTGGCTTACTTGGT
CCATGTGGGAAGAGGCAGTGGAGGACAGCCCAAGTGGTACAAGAAAAATG
ATTTTTGAAATTCTGTGGTCCTGGATCCAAAATCTACACTTGCCACTTCA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_o10.g1 MSMg01no419_o10.g1 CHROMAT_FILE:
MSMg01no419_o10.g1 PHD_FILE: MSMg01no419_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:35 2005
         (245 letters)



>mm_chr4_108897308_108897952
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttctttcccccagatttttatatccccacaatggtggctgctgtggtcattagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 cagtttctttcccccagatttttatatccccacaatggtggctgctgtggtaattagctt 386

                                                                       
Query: 61  tccctccatatctgtctgtgttgtcagtctgatgatcctcccattttctctgtcaacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccctccatatctgtctgtgttgtcagtctgatgatcctcccattttctctgtcaacact 326

                                                                       
Query: 121 cctgcctatggtaatgtgccagtccctgggaaagttctgggtttctacatgctcatgttg 180
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgcctacagtaatgtgccagtccctgggaaagttctgggtttctacatgctcatgttg 266

                                                                       
Query: 181 ttccaacggtcactggtattattgtccgcagccacaggacacttggcggccttccacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccaacggtcactggtattattgtccgcagccacaggacacttggcggccttccacagt 206

                
Query: 241 gacca 245
           |||||
Sbjct: 205 gacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)