Query= MSMg01no419_o21.b1 MSMg01no419_o21.b1 CHROMAT_FILE:
MSMg01no419_o21.b1 PHD_FILE: MSMg01no419_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:37 2005
(271 letters)
>mm_chr4_134324232_134324902
Length = 671
Score = 516 bits (267), Expect = e-151
Identities = 270/271 (99%)
Strand = Plus / Minus
Query: 1 gcaaggctacacaccgagggcctgcccagacaggccggtgggtgcactacagataggatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gcaaggctacacaccgagggcctgcccagacaggccggtgggtgcactacagataggatc 412
Query: 61 acgcttcatttgacagatatcatgactcagagcagggaaggacagcctgggtcacacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acgcttcatttgacagatatcatgactcagagcagggaaggacagcctgggtcacacagc 352
Query: 121 acgcctgagtctgcgtctaaggttgcaatgtccctgagactgtgggggcagaggacagct 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atgcctgagtctgcgtctaaggttgcaatgtccctgagactgtgggggcagaggacagct 292
Query: 181 aagaaagctgctaagggcatctaccaatacactcccgatccttcccagcaaaattcgcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aagaaagctgctaagggcatctaccaatacactcccgatccttcccagcaaaattcgcgg 232
Query: 241 ccttcattccctcgttcaaagactcccattg 271
|||||||||||||||||||||||||||||||
Sbjct: 231 ccttcattccctcgttcaaagactcccattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_o21.g1 MSMg01no419_o21.g1 CHROMAT_FILE:
MSMg01no419_o21.g1 PHD_FILE: MSMg01no419_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:37 2005
(241 letters)
>mm_chr4_134150588_134151228
Length = 641
Score = 215 bits (111), Expect = 2e-60
Identities = 123/127 (96%)
Strand = Plus / Plus
Query: 26 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 85
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 195 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 254
Query: 86 aagaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgg 145
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 314
Query: 146 gtaagaa 152
|||||||
Sbjct: 315 gtaagaa 321
Score = 215 bits (111), Expect = 2e-60
Identities = 123/127 (96%)
Strand = Plus / Plus
Query: 57 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 116
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 195 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 254
Query: 117 aagaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgg 176
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 314
Query: 177 gtaagaa 183
|||||||
Sbjct: 315 gtaagaa 321
Score = 215 bits (111), Expect = 2e-60
Identities = 123/127 (96%)
Strand = Plus / Plus
Query: 88 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 147
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 195 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 254
Query: 148 aagaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgg 207
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgc 314
Query: 208 gtaagaa 214
|||||||
Sbjct: 315 gtaagaa 321
Score = 207 bits (107), Expect = 5e-58
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 119 gaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggt 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 195 gaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgt 254
Query: 179 aagaattcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatg 237
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 255 aagaattcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatg 313
Score = 203 bits (105), Expect = 7e-57
Identities = 117/121 (96%)
Strand = Plus / Plus
Query: 1 acagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggtaagaat 60
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 acagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgtaagaat 260
Query: 61 tcacagtggctggggtagcatgggtaagaattcacagtggctggggtagcatgggtaaga 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcacagtggctggggtagcatgcgtaagaattcacagtggctggggtagcatgcgtaaga 320
Query: 121 a 121
|
Sbjct: 321 a 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
