BAC Information

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BAC

Clone NameMSMg01-420C17
Chromosome4 (Build37)
Map Location 146,902,344 - 146,902,920
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420C17.T7 (MSMg01no420_c17.b1)MSMg01-420C17.TJ (MSMg01no420_c17.g1)
ACCAG515098AG515099
length734741
length of high quality
(start - end)		687 (36 - 722)577 (66 - 642)
definitionCHROMAT_FILE: MSMg01no420_c17.b1 PHD_FILE: MSMg01no420_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:55 2005CHROMAT_FILE: MSMg01no420_c17.g1 PHD_FILE: MSMg01no420_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAG
GAATTTCCCACTGGGGTAACTATTAACATATCAATGAAGACAGGGATTGG
GATGGTGCTTTCTTGACTCCTGGTTAACTCTTGGCCTGACCTCTATTCTC
CTTCTCATCTTCAATTCCCTTCACCCCACCTGATGAACTGGTTCAGTCTG
GACCCAAAGAGTTAACTCTGAATGCTTTCTCCCTCCTGCTGAAATGCCAA
AAATTAACCCCACCACCAGCCCAAGAACCAGGTATCTTCTTGCAGCTCTG
CAGGTTGCATGACTTATGAAAATAATAAAGCCTCACAGAAAACGACAAGG
GCTTATAAAACTGGCAGTAGGAAGTGATCAAAGTCCATCTCTTGGTCAAG
ATGTAATATTTTAAAAAGCTTTCCAACATTGTAGAATTGTTTTTCTCTGA
CAACACTCAGGGTTAACAGAACCTACTATATATCTTCTCCTCTATTGTAC
ATTGCTGCAATCCTGTCTTCATGTTTCAATGAAACCTAAGGGGTAACATT
AATAACTAAGACTATGAAGACGCATCTCTGAATGCTGTATTTACATCAAA
GACTACATATTCCTCAGTGTGAAACTAATGGAGACTATAACTTTGTTAGG
TTAATGTTAATATTTACAGCCATATTATGGTGCTTTATAACGTAAATTTT
CCAATTCAATGAAATCTCCACCGATCCCCCATAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTAGATACTCTTCATTTCACGGTGCAGATAGTTT
GTGCATATTCACATGTCATGTTTCCATTGTTCTGTTTTCCATGTAAAAAA
ATGTCTTCTTATTCTTCATGTGTATCTTTTTGATTGAAGTCATTTATTCA
CATGATATCACTGCAGCCCTTCCTCTCTTCCTAGTAACCCCTCACATAAA
TCTCCCCTCACTCCGCTTCGAAGCAGAAGTATTCATCTGTCGGATGTAGA
GGTAGTGCAGTTCTTTTCCTAGTCTATAGGGATCCTGAAGATGGTGACTT
TTGACTTACAGAAGCACTTAGCATTTATGAGTTTCCATTTATTAATTCTT
GACTTTATCATCAGAGACACTGGTGTTCTGTTTAGGAAGTTGTTTCCTGA
TCTAACAAGTTCAAAGCTACTCTCCACTTTTTGTTCCATTAGATTAAGTA
TGTCTGGATTTATATTGAGGTCTTTGCTTCACTTGGACTTGAGTATTATG
CAGGGTGTTAAATATGGATCTATATGCTTTTTTCTACCTGATGACATCCA
GTTAGACCAGCATCATTCATAAAGATGTTCTCTCCTTTCCGTTGTATAGT
TTTAGCTTCTTTGCCAAAATTTAAGTGTCTGTAGGTGTGTGGGTCTATGT
TTGGGTCTCCTATTGAAATTCATTAATCCACCTACTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_c17.g1 MSMg01no420_c17.g1 CHROMAT_FILE:
MSMg01no420_c17.g1 PHD_FILE: MSMg01no420_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:55 2005
         (577 letters)



>mm_chr4_146902144_146903120
          Length = 977

 Score = 1116 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 260

                                                                       
Query: 61  attgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatctttttgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatctttttgatt 320

                                                                       
Query: 121 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 380

                                                                       
Query: 181 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 440

                                                                       
Query: 241 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 500

                                                                       
Query: 301 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 560

                                                                       
Query: 361 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 620

                                                                       
Query: 421 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagta 680

                                                                       
Query: 481 ttatgcagggtgttaaatatggatctatatgcttttttctacctgatgacatccagttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatgcagggtgttaaatatggatctatatgcttttttctacctgatgacatccagttag 740

                                                
Query: 541 accagcatcattcataaagatgttctctcctttccgt 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 accagcatcattcataaagatgttctctcctttccgt 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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