Query= MSMg01no420_f06.b1 MSMg01no420_f06.b1 CHROMAT_FILE:
MSMg01no420_f06.b1 PHD_FILE: MSMg01no420_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:08 2005
(225 letters)
>mm_chr4_123169492_123170116
Length = 625
Score = 427 bits (221), Expect = e-124
Identities = 224/225 (99%)
Strand = Plus / Minus
Query: 1 tgtctatggtctgtctactgtctatctgaataagtgagtaccatgtctatgatctctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgtctatggtctgtctactgtctatctgaataagtgagtaccatgtctatgatctctcta 366
Query: 61 ctatcaatctgagtaagctgaagtcttagatccaaagggtagtcattttctattgagatt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caatcaatctgagtaagctgaagtcttagatccaaagggtagtcattttctattgagatt 306
Query: 121 gttcaatgaatgatcagaaagactgcagctcttgaagagtaggtgtctaggctgagaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gttcaatgaatgatcagaaagactgcagctcttgaagagtaggtgtctaggctgagaaat 246
Query: 181 tttggctttagttcctaagtagcatggaataaatctatttgaact 225
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttggctttagttcctaagtagcatggaataaatctatttgaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space: 133056
Effective search space used: 133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no420_f06.g1 MSMg01no420_f06.g1 CHROMAT_FILE:
MSMg01no420_f06.g1 PHD_FILE: MSMg01no420_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:08 2005
(477 letters)
>mm_chr4_123015488_123016370
Length = 883
Score = 814 bits (421), Expect = 0.0
Identities = 468/493 (94%), Gaps = 16/493 (3%)
Strand = Plus / Plus
Query: 1 cctgggtaagagccaaaggaagagaccctgaggtcagtgatgagaaaggatctgtggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctgggtaagagccaaaggaagagaccctgaggtcagtgatgagaaaggatctgtggcca 250
Query: 61 cagagctggcaggggcagagggagaccacggccgggtctctcacacagtctc-------- 112
||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 251 cagagctggcaggagcagagggagaccacgaccgggtctctcacacagtctcacacagtc 310
Query: 113 --tctctttcatacccagacaccacagttcattgctgcccctgcccttggccaccgtagg 170
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 311 tctctctttcatacccggacaccacagttcattgctgcccctgcccttggccatcgtagg 370
Query: 171 ccttgggaataaaagctcctgggctgggaaaggggtcaatgcatgtgctgatggctccat 230
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccttgggaataaaagctcctgcgctgggaaaggggtcaatgcatgtgctgatggctccat 430
Query: 231 tgtggtcccacctagattctgcctgtt------gtttgtgcctcagtttccccatccagg 284
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 431 tgtggtcccacctagattctgcctgttagtgttgtttgtgcctcagtttccccatccagg 490
Query: 285 acagagccacctgcctgtccactgacatgagcagagctggtccttcctgcctgaggccac 344
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 491 acagagccatctgcctgtccactgacatgagcagagctagtccttcctgcctgaggccac 550
Query: 345 ccagtcagggacggggcagtgagcaagcaggttcctctgaaacagacctaatgatcaggg 404
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccggtcagggacggggcagtgagcaagcaggttcctctgaaacagacctaatgatcaggg 610
Query: 405 ctgggaggcatctcgttttcctgatgctatcactcagatgcctggaggaaacagactaca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgggaggcatctcgttttcctgatgctatcactcagatgcctggaggaaacagactaca 670
Query: 465 gaaagaagcacac 477
||||| |||||||
Sbjct: 671 gaaaggagcacac 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 883
Length adjustment: 10
Effective length of query: 467
Effective length of database: 873
Effective search space: 407691
Effective search space used: 407691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
