BAC Information

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BAC

Clone NameMSMg01-420K04
Chromosome4 (Build37)
Map Location 100,545,987 - 100,546,234
singlet/doubletsinglet
Overlap geneCachd1
Upstream geneBC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573
Downstream geneLOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420K04.T7 (MSMg01no420_k04.b1)MSMg01-420K04.TJ (MSMg01no420_k04.g1)
ACCAG515455AG515456
length522735
length of high quality
(start - end)
---246 (324 - 569)
definitionCHROMAT_FILE: MSMg01no420_k04.b1 PHD_FILE: MSMg01no420_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:33 2005CHROMAT_FILE: MSMg01no420_k04.g1 PHD_FILE: MSMg01no420_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGGAGGCTCAAATGGGCGCTAAGATACATTTCAAAAGCGGGAANCCAG
ATCCGAGAATCCCAGGGNCAAACCAAGGAACAGGNATCTCCCAGCTTATG
CCCGAATAAGATACATCTCATCTGGTTCATTTATTAAAGTTTTCCAAACC
CAAAGCTCTTTCCCGTCTTGGAACCGGAAGTCTAAAAAGGGCTTAAACCC
CCATTAATTAAGCCATGGGGCTAAATAAACTCCCAAAGCCCCCTTTAAAG
GGAAGCGCCCCCCTTTTAAGAAAAACTTATTCTTTTAATAAAGGGGGTCC
CCGGGAAAAACCCTGGAAAAAAAATTTCTCTAACAGGGCCTCCCCTACGG
GGTTTTCCCCTGCTTTTTGTGGTATACCAATCCCCCCCCTCCCGTGGGGG
GGCCCCTTTTTCACAAGTGGCGGTTTTCAAAAAAAAAAGGGGGCGTTTCT
TTTTTTTTTTTTCCAAAGACGGGGGCGCCGAACAAAAACCCAACATACAC
TCACCCTCTAGGCGGCTTTATT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCAAGAAATTCTGGCTTGACTCTTTTTGACTTTTAAAAAAATGT
TTATTTTATTTTATGTCTAATCGTGTATTCTTGAGTTCCTGTATTACCAC
TTGTGTACAGATGCCCAAAGAGACCAGAAGAGAGCATCAGGTCCCTTGGA
GCTGGAGATAAAGGCTCTGCTGAGCCTGGCGGCTAGCAGTGGAATCCTGA
TCCTCCAGAGGAGCACCAAGTGCCATCACAGCTAAGCCCTCACTCCAGCT
CCCTTCTCCTTTACTGGTTAATGGTTTTAGACACATTTTGCTCTCTACCA
GGTGCTTAATTAGCTTCTAATTATGAATCACAGAATTGTTACACTGCTTA
TGGTTTTTTTTTTCTTCTGGATGGTCTCCAGATTTTCCTTTATTTTATTT
ATTGACTATTTGTTTGTTGTCTTTTAGGGACTTGACTATAACTGACGAGG
CACAGCAATCTTTACATTTATTCTGTGTGGAATTTTGTGGTGTGGTGGTT
GTATTTTGGTTTGCTTCGTTTGCACTGCCTGACTCTGTCACTGTGCTCCG
TTCATCACCTGTCTGCATCTTCTTATATCTTTTTTTTTGACTTTCCTGCT
CCTTTTTTTTTTTTTACTCATTGCCCCCCGCTACTTCTGTTATCCCTATC
ATCTCTCCCATTATTTCCCTTTTCCCTCCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_k04.g1 MSMg01no420_k04.g1 CHROMAT_FILE:
MSMg01no420_k04.g1 PHD_FILE: MSMg01no420_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:33 2005
         (246 letters)



>mm_chr4_100545787_100546437
          Length = 651

 Score =  449 bits (232), Expect = e-131
 Identities = 242/248 (97%), Gaps = 5/248 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttagacacattttgctctctaccaggtgcttaattagcttctaattatgaatcacag 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttagacgcattttgctctctaccaggtgcttaattagcttctaattatgaatcacag 260

                                                                       
Query: 61  aattgttacactgcttatggtttttttttt-----cttctggatggtctccagattttcc 115
           ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||
Sbjct: 261 aattgttacactgcttatggtttttttttttttttcttctggatggtctccagattttcc 320

                                                                       
Query: 116 tttattttatttattgactatttgtttgttgtcttttagggacttgactataactgacga 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattttatttattgactatttgtttgttgtcttttagggacttgactataactgacga 380

                                                                       
Query: 176 ggcacagcaatctttacatttattctgtgtggaattttgtggtgtggtggttgtattttg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcacagcaatctttacatttattctgtgtggaattttgtggtgtggtggttgtattttg 440

                   
Query: 236 gtttgctt 243
           ||||||||
Sbjct: 441 gtttgctt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 651
Length adjustment: 9
Effective length of query: 237
Effective length of database: 642
Effective search space:   152154
Effective search space used:   152154
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)