CTATACGACTCACATAGGTCGNTACTCGGCGGAANNNNNNGNNAGCTTTC
AGACACAGTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTG
AGTTTTTCTATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTA
AAAATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTC
TTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTC
TCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCT
GTGTTTCATTCTTCAAGGTTTTTCCCCACTTTCTCCTCTATAAGTTTCAG
TGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAG
TACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAAC
CAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGAT
GGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCG
TTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATAC
CAGTACCATGCAGTTTTTACCACAATTGCTCTGTAGTAAAGCTTTAGGTC
ATGCATGGTGATTCCACCAGAAGTTCTTTTATCCTTGAGAAGAGTTTTTG
CTATACTAGGTTTTTTGTTATTCCCGATGAATTTGCAN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACATGAGGAATACCAAATGGCTGAGAAGC
ACCTGAAAAAATTTTTAGCATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAT
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAAAAAGAGGAACACTCC
TCCATTGTTCGTGGGATTGCAACCTTGTACAACCACTCTGGAAATCAGGC
TGGCGGTTCCTCAGATTTTTGGACATAAAAAGATTTTATAGGTATATGGA
AAAAAGTCAGTGTTAAGATTGTCTTGGGAAGTTATTGTAAATGAAAATTA
TTAAGGGTTATGTCATAGGTGGCAAAAATGTACTTTGAAGACAGGCAAAG
TAATTTGTATGTTTCATTGATTCTAACAATCTTAGTCTGTTATAGTTTAA
TACTTCTAAAATAGGAACAAATATTTTCATCAATAATATTTTTATACCTT
GTCATATTGTATTCAGATTTGATGTTTGAGGGCAATAGAACTGAAACAAT
TCTAAGGACAAAGTTTTCTCAACAATTTGAGTATATGCCCTGGAAAGATG
AAAAAGAGAGATTGATTTTACACAAACTTAATTTAAAGTCATAGCAGCAT
TTTAATGCCTCATCTTTCACAAAGAATACA

Query= MSMg01no420_k05.g1 MSMg01no420_k05.g1 CHROMAT_FILE:
MSMg01no420_k05.g1 PHD_FILE: MSMg01no420_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:33 2005
         (602 letters)



>mm_chr4_74991677_74992678
          Length = 1002

 Score =  944 bits (488), Expect = 0.0
 Identities = 530/544 (97%)
 Strand = Plus / Minus

                                                                        
Query: 58   atcatcagggaaatgcaaatcaaaacaacactgagattccacctcacaccagtcagaatg 117
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 atcataagggaaatgcaaatcaaaacaacactgagattccacctcacaccagtcagaatg 943

                                                                        
Query: 118  gctaagatcaaaatttcaggtgacagcagatgctggcgaggatgtggaaaaagaggaaca 177
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 942  gctaagatcaaaatttcaggtgacagcagatgctggcgaggatgtgaaaaaagaggaaca 883

                                                                        
Query: 178  ctcctccattgttcgtgggattgcaaccttgtacaaccactctggaaatcaggctggcgg 237
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 882  ctcctccattgttcgtgggattgcaaccttgtacaaccactctggaaatcagtctggcgg 823

                                                                        
Query: 238  ttcctcagatttttggacataaaaagattttataggtatatggaaaaaagtcagtgttaa 297
            |||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 822  ttcctcagaaagttggacataaaaagattttataggtatatggagaaaagtcagtgttaa 763

                                                                        
Query: 298  gattgtcttgggaagttattgtaaatgaaaattattaagggttatgtcataggtggcaaa 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  gattgtcttgggaagttattgtaaatgaaaattattaagggttatgtcataggtggcaaa 703

                                                                        
Query: 358  aatgtactttgaagacaggcaaagtaatttgtatgtttcattgattctaacaatcttagt 417
            |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 702  aatggaatttgaagacaggcaaagttatttgtatgtttcattgattctaacaatcttagt 643

                                                                        
Query: 418  ctgttatagtttaatacttctaaaataggaacaaatattttcatcaataatatttttata 477
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 642  ctgttatagtttaacacttctaaaataggaacaaatattttcatcaataatattttcata 583

                                                                        
Query: 478  ccttgtcatattgtattcagatttgatgtttgagggcaatagaactgaaacaattctaag 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 582  ccttgtcatattgtattcagatttgatgtttgagggcaatagaactgaaacaattttaag 523

                                                                        
Query: 538  gacaaagttttctcaacaatttgagtatatgccctggaaagatgaaaaagagagattgat 597
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 522  gacaaagttttctcaacaatttgagtatatggcctggaaagatgaaaaagagagattgat 463

                
Query: 598  ttta 601
            ||||
Sbjct: 462  ttta 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)