BAC Information

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BAC

Clone NameMSMg01-420L15
Chromosome4 (Build37)
Map Location 15,670,314 - 15,832,690
singlet/doubletdoublet
Overlap geneLOC100040095, LOC633695, Calb1
Upstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneDecr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420L15.T7 (MSMg01no420_l15.b1)MSMg01-420L15.TJ (MSMg01no420_l15.g1)
ACCAG515524AG515525
length733788
length of high quality
(start - end)		267 (318 - 584)458 (67 - 524)
definitionCHROMAT_FILE: MSMg01no420_l15.b1 PHD_FILE: MSMg01no420_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:40 2005CHROMAT_FILE: MSMg01no420_l15.g1 PHD_FILE: MSMg01no420_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,832,424 - 15,832,690)(15,670,314 - 15,670,771)
sequence
NCTCTTATTTGCGCCGCGATCGACTCCCATAGGTCGACGAGAGCGGGGTC
TCAGATTTCTCCGAGAATTTTGAAAGTGATCTCTCATGAGCCATAGAATC
CCCGAATATACACTTTTGATGAGAAACATTCTTCATACTCGGTGCTGTGA
GTCTTCACATTTTAATTCTTCTACACATTTTAAATAATAGTATATATATC
TATAGAAAATATTTTTTCAGAGGCCGCATACCCCCGTGGGGGATGTGAAC
AGCTCCACATAGAAAACCCGGAAGGAAGGCAAACTAAACCCCAAAATACC
CAGAACTTTTTTTTTAATCAGAGAGCACACAGAGAATATGACATAAAACA
GCAGTTTACTAGAATAATTGTCATCTGGAACACATGAAAATAATTTAGAA
AATGGGCTATGGTCATACTCTCTGGCAGTAGACTTCTTGGAAATATAGGC
ATAGAATCAGACATAGTTATGTGTCATCTGGCTACCTTCCCTTACCAAGC
CAGCTGGAGTCAATAGCGTGGTTTATATTTAAGCAGTAGACATGTCACTG
ATCAGTACACTAAATCTCTAGGGAGATCGTTTCAGAATAAAGCCATAATT
AACTGTTGATATTTGGTGCTTCAGAGGGAGAAGCCCATCCCTCCCGCCCG
ATAGAAGCCGCCCAGAGCTGTTTTGGGTGACAGCCCTAATGGTTGCCTAA
ATAAAAAAAGTTGGTTGGCCCCGAGTATTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCATGTCTTCACCTTAAAGCAAGAAAAACAAGAT
AGAAGGCAGTAACTCTGCCTTTGGCATCCAGGGGATCCAGAAAGATTCCT
GAGTGCGTGTGTGAGTGCATTCTGATTCTTGGGCCTTCTCTTGGGCTCTT
TTACTTCTGTTTGCTTTGTCTGACTCAAATGTGATAATTTGTTTTATCTT
ATTATATTTTATTTTGTCATATTTAAAATTAAGGTGGCAAGTGATAAAAG
ATTCCTATTGTCAACCTCTGACTTCCAAATTCACACACACACACAAGCCT
GTATACACAAGTATTCAGACACATGTGCCACAGGCATAAATTTAAAATCT
AACTCCTCCTTTTAGTTTTATATGTGAGGAGTTAGAAACACTGAAGTTCC
TCTCATCCTTTGAAATTCTGCATTCAGAGCATGGATATGCTTGTCTGAAT
AGCTTTCAATATTCTATATAACAGNTCTTTCCCAGTTTTACTGTCTTAAT
CATATATACAAATATCAGAAATTTGCCCATTCTTCTTTACCACGAAGTTT
TCACTGGAAGCAATTAAAGACTTTCCGACCGGGATTTTAAGGAATTGAGC
TTCCCCCTTGGTGTTGTTTCCCAAACCAAGAGTTTGGGAACCCCTATACC
TCAATTTTGTGGTTGGAAATCTTCCCGTTTTTTCTTCGTTATAAACCCCC
CCTCTCCCCCTTATGGTGTTTTATGGGTCCACATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_l15.b1 MSMg01no420_l15.b1 CHROMAT_FILE:
MSMg01no420_l15.b1 PHD_FILE: MSMg01no420_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:40 2005
         (267 letters)



>mm_chr4_15832224_15832890
          Length = 667

 Score =  509 bits (263), Expect = e-149
 Identities = 266/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagagcacacagagaatatgacataaaacagcagtttactagaataattgtcatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcagagagcacacagagaatatgacataaaacagcagtttactagaataattgtcatctg 408

                                                                       
Query: 61  gaacacatgaaaataatttagaaaatgggctatggtcatactctctggcagtagacttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaacacatgaaaataatttagaaaatgggctatggtcatactctctggcagtagacttct 348

                                                                       
Query: 121 tggaaatataggcatagaatcagacatagttatgtgtcatctggctaccttcccttacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tggaaatataggcatagaatcagacatagttatgtgtcatctggctaccttcccttacca 288

                                                                       
Query: 181 agccagctggagtcaatagcgtggtttatatttaagcagtagacatgtcactgatcagta 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agccagctggagtcaatagtgtggtttatatttaagcagtagacatgtcactgatcagta 228

                                      
Query: 241 cactaaatctctagggagatcgtttca 267
           |||||||||||||||||||||||||||
Sbjct: 227 cactaaatctctagggagatcgtttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no420_l15.g1 MSMg01no420_l15.g1 CHROMAT_FILE:
MSMg01no420_l15.g1 PHD_FILE: MSMg01no420_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:40 2005
         (458 letters)



>mm_chr4_15670114_15670971
          Length = 858

 Score =  878 bits (454), Expect = 0.0
 Identities = 457/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgtcttcaccttaaagcaagaaaaacaagatagaaggcagtaactctgcctttggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgtcttcaccttaaagcaagaaaaacaagatagaaggcagtaactctgcctttggca 260

                                                                       
Query: 61  tccaggggatccagaaagattcctgagtgcgtgtgtgagtgcattctgattcttgggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaggggatccagaaagattcctgagtgcgtgtgtgagtgcattctgattcttgggcct 320

                                                                       
Query: 121 tctcttgggctcttttacttctgtttgctttgtctgactcaaatgtgataatttgtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttgggctcttttacttctgtttgctttgtctgactcaaatgtgataatttgtttta 380

                                                                       
Query: 181 tcttattatattttattttgtcatatttaaaattaaggtggcaagtgataaaagattcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttattatattttattttgtcatatttaaaattaaggtggcaagtgataaaagattcct 440

                                                                       
Query: 241 attgtcaacctctgacttccaaattcacacacacacacaagcctgtatacacaagtattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgtcaacctctgacttccaaattcacacacacacacaagcctgtatacacaagtattc 500

                                                                       
Query: 301 agacacatgtgccacaggcataaatttaaaatctaactcctccttttagttttatatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 agacacatgtgccacaggcataaatttaaaatctaactcctccttttagttttatatttg 560

                                                                       
Query: 361 aggagttagaaacactgaagttcctctcatcctttgaaattctgcattcagagcatggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggagttagaaacactgaagttcctctcatcctttgaaattctgcattcagagcatggat 620

                                                 
Query: 421 atgcttgtctgaatagctttcaatattctatataacag 458
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcttgtctgaatagctttcaatattctatataacag 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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