XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCTAAGACTTCCTATCCAAATTCATAGATTTATGACCTTAGGACCCCTT
AAGTAGAAGTTGCCTACTACACAAGAGGCTAAGAGCTGGCTTTAAAGGGA
GCACAGTGCATGTGCCTGTGTCAATACTAGACCTGCAGAAAGACTGCTTG
AGCGCAGGCACTTTGAGGAACCTGATCAATACAGCAAAATATCATCTCCA
TTTAAAAAAAAAACTATTTCTAGAATCGGTGTGATTCTTATCCAAACATA
TTTTCTACTGGGGTTATGTATCTATTTAGCCAAGGAACAGTTACCCGATT
TTACCAGATTAAATAAGGAAATTGCCCTGCCCATGCTTACCATAACCAAA
ACTGGAAGCTGAAGGTGGTTTCCAGGACCCATGCATGGGGTAACCCACCT
CCAGGAACAAACCCTTACCAAAAAAAAAGGCCCTCAACCCCCCAAAAGCC
CCCGGGATCCCCCCCTTTTAAAAAAAAGGGGGTTTTTTACCCCATATAAA
AAACAATTCCCGTGGAATTTTTTTCCCAAATTTATCCCAAAGGGGGCCCC
AAAAAAAAAAAAAAACCGTTCCCACAAAAAAAAAATATTCCCCGCGGGGT
CTTCTTTTATTACCCCCCTTACCCCCTTTCCCGGGGGTGTAATGGGATAC
TCCTTTTTTNCCCTCATTTATTCATCAATATCCCTCTTCCTTAATTATGG
GGGCGCGTTCCTTCCTCCCCCCCTCCGAATGGTGGGCGTTCCTCTCTTTT
CCCATCCCTCTTTCCTTCCGTCGCGTTTTGTTTCTCCCTCTAT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACATTTCCCATGGATGCAGTACCCATTGAG
GTTTTCAGGGCAAGGCATGTGGCTTCCGATATAAACATCTTCCCTTTCAT
CACCTGCATCTTAAAAGAACACAAACCAGCTCACTGAATACTGAAAACAA
AAATGGAAAATACAAACCCTTTCAAAGGCTCAGAAACAAATGAATTCGCT
CTGCCATCACCCGCTGGGCAATTTAGAAGGGAGACTTATCAGAGAGGGTA
ATCGAGATGTGAGGTCCCTGGCAAGCCACCATGCACAAACACGGCAAGCA
GGCAGACAAGTGAGACAGAGAGCACACAAAAACAGCTGCAGAACACGGCC
ACTGTGAACTACGGCTACAGTAAAAACAATCTGAAAAAGAAAAACATCTT
CGCTAAGCTATAAATGCCAGGTCCAGAAGGAAGTTGGCCCTGTGACAGAG
ATGGTGTACTTAATACTGTCTTTGGAGGGGTGAAGCTGATCTCTTACCTG
GAGCCTATGAGACGGTAGATCAATGGCACTGGCAGAGAGCAAGTTAAGGG
ATTCTGAAACTCTGGGTAAAAGATTTGGTTTGGTGTTGGGCAGAGGTGGC
CCACGCCTTTTAATCCCACACTCTGGGAAGGAGAACAAGGAAATTTCTGA
AATCCAGTCCACCCTGATCTAACAAAGGGAGTTTCTGAATAACTCTGGAT
ACCCCTAAAAACCCCTTTCTTTGCCCGGTTGGCN

Query= MSMg01no421_b07.b1 MSMg01no421_b07.b1 CHROMAT_FILE:
MSMg01no421_b07.b1 PHD_FILE: MSMg01no421_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
         (216 letters)



>mm_chr4_48484281_48484896
          Length = 616

 Score =  364 bits (188), Expect = e-105
 Identities = 206/212 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctaagacttcctatccaaattcatagatttatgaccttaggaccccttaagt 64
           |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctaagacagcatatccaaattcatagatttatgaccttaggaccccttaagt 264

                                                                       
Query: 65  agaagttgcctactacacaagaggctaagagctggctttaaagggagcacagtgcatgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 agaagttgcctactacacaagaggctaagagctggctttaaagggagcacagtgcatttg 324

                                                                       
Query: 125 cctgtgtcaatactagacctgcagaaagactgcttgagcgcaggcactttgaggaacctg 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 cctgtgtcaatactagacctgcagaaagactgcttgagctcaggcactttgaggaacctg 384

                                           
Query: 185 atcaatacagcaaaatatcatctccatttaaa 216
           ||||||||||||||||| ||||||||||||||
Sbjct: 385 atcaatacagcaaaataccatctccatttaaa 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no421_b07.g1 MSMg01no421_b07.g1 CHROMAT_FILE:
MSMg01no421_b07.g1 PHD_FILE: MSMg01no421_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
         (485 letters)



>mm_chr4_48662571_48663455
          Length = 885

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatttcccatggatgcagtacccattgaggttttcagggcaaggcatgtggcttccgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatttcccatggatgcagtacccattgaggttttcagggcaaggcatgtggcttccgat 626

                                                                       
Query: 61  ataaacatcttccctttcatcacctgcatcttaaaagaacacaaaccagctcactgaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataaacatcttccctttcatcacctgcatcttaaaagaacacaaaccagctcactgaata 566

                                                                       
Query: 121 ctgaaaacaaaaatggaaaatacaaaccctttcaaaggctcagaaacaaatgaattcgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgaaaacaaaaatggaaaatacaaaccctttcaaaggctcagaaacaaatgaattcgct 506

                                                                       
Query: 181 ctgccatcacccgctgggcaatttagaagggagacttatcagagagggtaatcgagatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 ctgccatcacccgctgggcaatttagaagggagacttatcagagagggtaagcgagatgt 446

                                                                       
Query: 241 gaggtccctggcaagccaccatgcacaaacacggcaagcaggcagacaagtgagacagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggtccctggcaagccaccatgcacaaacacggcaagcaggcagacaagtgagacagag 386

                                                                       
Query: 301 agcacacaaaaacagctgcagaacacggccactgtgaactacggctacagtaaaaacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 agcacacaaaaacagctgcagaacacggccactgtgaactacggccacagtaaaaacaat 326

                                                                       
Query: 361 ctgaaaaagaaaaacatcttcgctaagctataaatgccaggtccagaaggaagttggccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgaaaaagaaaaacatcttcgctaagctataaatgccaggtccagaaggaagttggccc 266

                                                                       
Query: 421 tgtgacagagatggtgtacttaatactgtctttggaggggtgaagctgatctcttacctg 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgacagagatggtgtacttaaaactgtctttggaggggtgaagctgatctcttacctg 206

                
Query: 481 gagcc 485
           |||||
Sbjct: 205 gagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)