Query= MSMg01no421_l20.b1 MSMg01no421_l20.b1 CHROMAT_FILE:
MSMg01no421_l20.b1 PHD_FILE: MSMg01no421_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:01 2005
(577 letters)
>mm_chr4_34987183_34988161
Length = 979
Score = 1083 bits (560), Expect = 0.0
Identities = 570/574 (99%), Gaps = 4/574 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctggtacatat-tcgaagcaagaacaaaaacctaaaagtgaccagaaggtcct 62
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggaattcctggtacatatat-gaagcaagaacaaaaacctaaaagtgaccagaaggtcct 718
Query: 63 gttttgtctccttcatctaatacacttgaatttagctctactgtcccattccatgaaggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gttttgtctccttcatctaatacacttgaatttagctctactgtcccattccatgaaggg 658
Query: 123 tcagggggcacaaccctgactgtcctaagacattttgtgtttcccagtttggcagaactc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcagggggcacaaccctgactgtcctaagacattttgtgtttcccagtttggcagaactc 598
Query: 183 ccaggacttaaaccagggtcaggattcaaagcagcccacacagttctttatctgcactga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ccaggacttaaaccagggtcaggattcaaagcagcccacacagttctttatctgcactga 538
Query: 243 ttagcattgtcctggctcccatggtctccttgagtttactgcatttaactaatggaggaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttagcattgtcctggctcccatggtctccttgagtttactgcatttaactaatggaggaa 478
Query: 303 gagggtgggcatgggatccttggacatgactgagaacattagtgcccaatagccagttat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gagggtgggcatgggatccttggacatgactgagaacattagtgcccaatagccagttat 418
Query: 363 tttggatgcattgtgcagccgttgctctttaatttatcatactccctggaaataagtcat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttggatgcattgtgcagccgttgctctttaatttatcatactccctggaaataagtcat 358
Query: 423 cataaaatgctcccttcagttcaggttttgggacttgggtaaatggaaataacatttcac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cataaaatgctcccttcagttcaggttttgggacttgggtaaatggaaataacatttcac 298
Query: 483 tttgtttatcttttgcgtctgctaccctccaggtctccaaacagatggaatcctt--cag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 297 tttgtttatcttttgcgtctgctaccctccaggtctccaaacagatggaatccttcacag 238
Query: 541 ttctgaccaactcttgctcatcccttggctctca 574
||||||||||||||||||||||||||||||||||
Sbjct: 237 ttctgaccaactcttgctcatcccttggctctca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 979
Length adjustment: 10
Effective length of query: 567
Effective length of database: 969
Effective search space: 549423
Effective search space used: 549423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_l20.g1 MSMg01no421_l20.g1 CHROMAT_FILE:
MSMg01no421_l20.g1 PHD_FILE: MSMg01no421_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:01 2005
(452 letters)
>mm_chr4_34830395_34831246
Length = 852
Score = 851 bits (440), Expect = 0.0
Identities = 449/452 (99%)
Strand = Plus / Plus
Query: 1 aaacagaccgaaatgattaatgttgtaacccggtggtttttaaggcacaaaagcttttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacagaccgaaatgattaatgttgtaacccggtggtttttaaggcacaaaagcttttct 260
Query: 61 aaaatctggttaccgttacgcgttacaagaatccacaccgaatcttagtttgggaaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatctggttaccgttacgcgttacaagaatccacaccgaatcttagtttgggaaagta 320
Query: 121 ggtcgaaggaaagaacacaattaaggatgttaaagtaaaaaaaggaacacgaatgtcaaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 321 ggtcgaaggaaagaacacaattaaggatgctaaagtaaaaaaaggaacacggatgtcaaa 380
Query: 181 taaatgccagtagcaaccctcctcttggtgctgcaaaacaggtggccttctaagccgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatgccagtagcaaccctcctcttggtgctgcaaaacaggtggccttctaagccgtat 440
Query: 241 tttatttgcaagacgaaaacagtatttggcattagaattggagaagagagctgagtgttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttgcaagacgaaaacagtatttggcattagaattggagaagagagctgagtgttg 500
Query: 301 tgtgcacggttgtaatctcagcactcggagacgagaggttcaaaagttcatccctggcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgcacggttgtaatctcagcactcggagacgagaggttcaaaagttcatccctggcta 560
Query: 361 cataatatttcctcctccagcctatgccagatgagttcttaaaaatttaaaggagtaggg 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 cataatatttcctcctccagcctatgccagatgagttcttacaaatttaaaggagtaggg 620
Query: 421 ggtagaataagaggtagtcggaaaatcaatgt 452
||||||||||||||||||||||||||||||||
Sbjct: 621 ggtagaataagaggtagtcggaaaatcaatgt 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
