Query= MSMg01no421_n06.b1 MSMg01no421_n06.b1 CHROMAT_FILE:
MSMg01no421_n06.b1 PHD_FILE: MSMg01no421_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:08 2005
(550 letters)
>mm_chr4_58900984_58901934
Length = 951
Score = 1031 bits (533), Expect = 0.0
Identities = 542/545 (99%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 7 gaattcaaccactacttccgtgaaagctccaagtaacaagcatattcttcagtgcattac 66
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaccactacatctgtgaaagctccaagtaacaagcatattcttcagtgcattac 266
Query: 67 agctcttaggcaggagaaaactgtccacagacac-acaaaaagttaaattttcttaacaa 125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 267 agctcttaggcaggagaaaactgtccacagacacgacaaaaagttaaattttcttaacaa 326
Query: 126 atttacctagaaaaatctatgacaaagttaaaaagggagatatattgtggttatttttaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atttacctagaaaaatctatgacaaagttaaaaagggagatatattgtggttatttttaa 386
Query: 186 tatactcatttgtaatgcaatgtgataatacaaaaaccaccaaacatcatacaagggcac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tatactcatttgtaatgcaatgtgataatacaaaaaccaccaaacatcatacaagggcac 446
Query: 246 tgcttctcaagcaggcagaattatatcttccacattcaatagagaaaggatcaatgtaca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgcttctcaagcaggcagaattatatcttccacattcaatagagaaaggatcaatgtaca 506
Query: 306 actaatcaggtcatcttttagagacataatgtacttttaagtaaacgctaatcaagctgg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 actaatcaggtcatcttttagagacataatgtacttttaagtaaacgctaatcaagctgg 566
Query: 366 gtgtggttaacatactcctgtaatcctagcatgatgaagactgagtcaggatgctgagaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtgtggttaacatactcctgtaatcctagcatgatgaagactgagtcaggatgctgagaa 626
Query: 426 gttcaaggccaccctactcataccaagaatctagcttaaagagagggtagggcacacaca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gttcaaggccaccctactcataccaagaatctagcttaaagagagggtagggcacacaca 686
Query: 486 gagaaggttctgagggaaaaggtaccaagactgctgccaagactgacaacctgagctgag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gagaaggttctgagggaaaaggtaccaagactgctgccaagactgacaacctgagctgag 746
Query: 546 cctca 550
|||||
Sbjct: 747 cctca 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_n06.g1 MSMg01no421_n06.g1 CHROMAT_FILE:
MSMg01no421_n06.g1 PHD_FILE: MSMg01no421_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:08 2005
(464 letters)
>mm_chr4_59069730_59070593
Length = 864
Score = 717 bits (371), Expect = 0.0
Identities = 388/401 (96%), Gaps = 12/401 (2%)
Strand = Plus / Minus
Query: 76 aagaagaagaaggaaggaggaggacaagaaaaggtcattaacttatggctccatatgcat 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aagaagaagaaggaaggaggaggacaagaaaaggtcattaacttatggctccatatgcat 749
Query: 136 gtgcatatacacacaactattttacacacacacacagaat------------gagagaga 183
|||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 748 gtgcatatacacacaactattttatacacacacacagaatgagagagagagagagagaga 689
Query: 184 gagagagagagagagagagagagacttttactgagctcctagatacctactggctacaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gagagagagagagagagagagagacttttactgagctcctagatacctactggctacaat 629
Query: 244 atacactatagctcatgtgtgaggtcctggaggtagcaccctgctggatttcgggctggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atacactatagctcatgtgtgaggtcctggaggtagcaccctgctggatttcgggctggg 569
Query: 304 ctttcctgccttccactagccaggtgctctctacttcaactgtttcctagaaagaaactg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctttcctgccttccactagccaggtgctctctacttcaactgtttcctagaaagaaactg 509
Query: 364 ctctcaggcccttaggacctgttcccaagcacttactgtgttttctcctccatctcctca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctctcaggcccttaggacctgttcccaagcacttactgtgttttctcctccatctcctca 449
Query: 424 gaactccctcatggactctttccatcctgtgaattgcttag 464
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaactccctcatggactctttccatcctgtgaattgcttag 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
