Query= MSMg01no421_p24.b1 MSMg01no421_p24.b1 CHROMAT_FILE:
MSMg01no421_p24.b1 PHD_FILE: MSMg01no421_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:21 2005
(515 letters)
>mm_chr4_138299581_138300495
Length = 915
Score = 967 bits (500), Expect = 0.0
Identities = 509/512 (99%), Gaps = 1/512 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgccctgtacacaa-ccgtgggtatctggccattaagagatacagtctgtcag 63
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctgccctggaaacaaaccgtgggtatctggccattaagagatacagtctgtcag 263
Query: 64 taggaaacaaggacataagggagcagggatggggggcatcctgcaatcccagcatttgag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggaaacaaggacataagggagcagggatggggggcatcctgcaatcccagcatttgag 323
Query: 124 acatggaggcaggagaggaaggagaggcaggaggccaggggcaacctccactatacggta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatggaggcaggagaggaaggagaggcaggaggccaggggcaacctccactatacggta 383
Query: 184 agttcaaggctagcctgagctactttagaccctgccttgaaaaattttttaaacattttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttcaaggctagcctgagctactttagaccctgccttgaaaaattttttaaacattttt 443
Query: 244 taaaggaaaataaaacaggggaacacaggggttgagctgaaaggtgctctcaaacccttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaaggaaaataaaacaggggaacacaggggttgagctgaaaggtgctctcaaacccttc 503
Query: 304 tccccagaagagcagagagccccaggatccagcctaaactcccctgtaccctctatcctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccccagaagagcagagagccccaggatccagcctaaactcccctgtaccctctatcctg 563
Query: 364 gtcaggatgtgtgtctgactggggaaccaagtcatctacccaggtcaggctgggaagtga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcaggatgtgtgtctgactggggaaccaagtcatctacccaggtcaggctgggaagtga 623
Query: 424 gccgggatcctagaaaacacagcccaggagcctcgcctggaatctcctcatttgcaccag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccgggatcctagaaaacacagcccaggagcctcgcctggaatctcctcatttgcaccag 683
Query: 484 gtctgacctctccagcaggatgcaggatgcac 515
||||||||||||||||||||||||||||||||
Sbjct: 684 gtctgacctctccagcaggatgcaggatgcac 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_p24.g1 MSMg01no421_p24.g1 CHROMAT_FILE:
MSMg01no421_p24.g1 PHD_FILE: MSMg01no421_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:21 2005
(447 letters)
>mm_chr4_138496161_138497007
Length = 847
Score = 857 bits (443), Expect = 0.0
Identities = 446/447 (99%)
Strand = Plus / Minus
Query: 1 cagggaacaagcattgctttcactggatgttttgtgatcaagagaggccactggcaacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cagggaacaagcattgctttcactggatgttttgtgatcaagagaggccactggcaacgc 412
Query: 61 gaaaagaaggggcaggaagcaaaattaaccaagctccatgagcgcatggttgagttgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaaaagaaggggcaggaagcaaaattaaccaagctccatgagcgcatggttgagttgcag 352
Query: 121 aggggcatgtgggacacatgcatcttacagtgtctcctgaaactttttggttgaggaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggggcatgtgggacacatgcatcttacagtgtctcctgaaactttttggttgaggaatc 292
Query: 181 tccttggccccctttaaatggaatccctgagttagctttcagcggctctgataaaatacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tccttggccccctttaaatggaatccctgagttagctttcagcggctctgataaaatacc 232
Query: 241 caaggcaaacatgttaaagagaggaagacttgctaaacagtggtgaggcactcctttaat 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 caaggcaaacaagttaaagagaggaagacttgctaaacagtggtgaggcactcctttaat 172
Query: 301 cctagcacttgggaggcagaagcaggcagctttctgagttcaaggccagcctggtctaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cctagcacttgggaggcagaagcaggcagctttctgagttcaaggccagcctggtctaca 112
Query: 361 gagtgagttccaggacagccagggctacacagagaaatcctgtctcaaaaaaaccaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gagtgagttccaggacagccagggctacacagagaaatcctgtctcaaaaaaaccaagag 52
Query: 421 agagagagagagagaggagagagagag 447
|||||||||||||||||||||||||||
Sbjct: 51 agagagagagagagaggagagagagag 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
