XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTTGCA
AGGATATCTATGAAGCAGAAAAGTAGAAAGCCAGTAGCGTTGTAAACAAA
TTAGACACAAATGTCTTGAGAAGTAGAAAGCAGAACAGCATCAGAATGAA
GCTTCCTGGTGTGAACTGGAGGGAAAAATAAGAAATCAGTAATATCAATT
ATTGAACAAAGAGGTCATAGATTTGAAGGGGAATGAGGAGAGGTACAAGT
GAGGGTTTGGAGGAAGGAATGGGAGAGGTGTTGCAATTATATAAAATCTC
AAAGATAAAGCAAAATATTTTTTTAATTAGTATCAGAAGCGAATGGGTTA
TTTTATTAAAGGTTCAGAACTGGAATGATGTCGAGGGTGAGGGATGGGGT
CAGGAGAGTACGAAGCAATACCTGACAAGATCATGTAAGTTTTTTAAATC
AAAATTAACAAGAGTAAAGCCTAAAATTTCATTGAGTTTTGCCAACTTGA
GATAACTTGAAATTAAATAGTAGATACCTTAAAGGAAACAAATCCCTATA
TTCAAATCAAGTGACAAAAGCATCTTCCCGAGTTAATGATAGTCGTTTTT
AGAAAGAACACCATTTTGGTTTCTCTTACTTGGAAAAGGCGAAGGAATAG
AACTGGGGAAAGGGTCCCGTTTTAACTCAAATTAATTGAACCTCCCTACC
TGAGTTATCACATAAAAGTTCCACCTCTTCTTGCCGCGCCTTTATTACCT
ACTTTTCCTTTTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAATCAACTATTTCAGTGCTAATGTAGAGTTGTTTCA
AAGTGAAAGAATTAAAATAGAGGATCAGACCTCTGTTCAATTTCCAGGAA
TATCTATTTTTGTGTGGGAGCAATATGTGGAGGTGTCCATTCAGCCTTAT
AGTCACCATTCCAGGGACGGCCACAGGNGTGGNAGGGAACGCAAATGGTG
CTAAGAATTTTAAGTTTTTGAGAGAAAAATATGGGGAAGGGTTTCCTTTC
CCTGGGGGCGGCCGAAAAAGAAAAATTTTTTTTTTTTTTTGGAGGCGAAA
AACACCTTTTGGTGTGGGGAAAATTAGTGGGTTTTGTTTAAAAAAATAAA
GGGNCCCCANCCCCCGCCCCCCCCAAAAAACANNNNACAACCGAGAATAA
ATTAATAAACCTTGAGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTATTGGGTCTTCTTGATAGGGNNNGNNNAGNNNNAGTNNNNNNNNNNNN
NNNAGGTGGNNNNNNNNNNNNNNTTCNCTTTTTAATGTTTGTGTGTTCCT
TTTCNNNNTNNNNNNNNNNNNNNNCNTATAAAGTTTTTTTTTTTTTTTCN
CTTTTTCTTGATGCTATTTTATTAATATANNTGCNTTATTTGTTGCTCTT
TATTTTCGCGTGATGTTATGAATATGTTGGTCTTTCNCCTNTTGTTATAG
TGACATATTTAGTTT

Query= MSMg01no422_a07.b1 MSMg01no422_a07.b1 CHROMAT_FILE:
MSMg01no422_a07.b1 PHD_FILE: MSMg01no422_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:23 2005
         (253 letters)



>mm_chr4_18939022_18939674
          Length = 653

 Score =  480 bits (248), Expect = e-140
 Identities = 251/252 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaaagtagaaagccagtagcgttgtaaacaaattagacacaaatgtcttgagaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaagtagaaagccagtagcgttgtaaacaaattagacacaaatgtcttgagaagta 260

                                                                       
Query: 61  gaaagcagaacagcatcagaatgaagcttcctggtgtgaactggagggaaaaataagaaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gaaagcagaacagcatcagaatgaagcttcttggtgtgaactggagggaaaaataagaaa 320

                                                                       
Query: 121 tcagtaatatcaattattgaacaaagaggtcatagatttgaaggggaatgaggagaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtaatatcaattattgaacaaagaggtcatagatttgaaggggaatgaggagaggta 380

                                                                       
Query: 181 caagtgagggtttggaggaaggaatgggagaggtgttgcaattatataaaatctcaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtgagggtttggaggaaggaatgggagaggtgttgcaattatataaaatctcaaaga 440

                       
Query: 241 taaagcaaaata 252
           ||||||||||||
Sbjct: 441 taaagcaaaata 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no422_a07.g1 MSMg01no422_a07.g1 CHROMAT_FILE:
MSMg01no422_a07.g1 PHD_FILE: MSMg01no422_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:23 2005
         (157 letters)



>mm_chr4_19129391_19129947
          Length = 557

 Score =  304 bits (157), Expect = 2e-87
 Identities = 157/157 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaactatttcagtgctaatgtagagttgtttcaaagtgaaagaattaaaatagaggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaactatttcagtgctaatgtagagttgtttcaaagtgaaagaattaaaatagaggatc 298

                                                                       
Query: 61  agacctctgttcaatttccaggaatatctatttttgtgtgggagcaatatgtggaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agacctctgttcaatttccaggaatatctatttttgtgtgggagcaatatgtggaggtgt 238

                                                
Query: 121 ccattcagccttatagtcaccattccagggacggcca 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ccattcagccttatagtcaccattccagggacggcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)