Query= MSMg01no422_f23.b1 MSMg01no422_f23.b1 CHROMAT_FILE:
MSMg01no422_f23.b1 PHD_FILE: MSMg01no422_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:48 2005
(374 letters)
>mm_chr4_26033914_26034685
Length = 772
Score = 572 bits (296), Expect = e-168
Identities = 349/378 (92%), Gaps = 24/378 (6%)
Strand = Plus / Minus
Query: 1 acatttttaagtgatattcatgtgtgtgtgtgtgtgtgtgtttaatataatacttattgt 60
|||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 575 acatttttaagtgatagtca----------tgtgtgtgtgtttaatataatacttattgt 526
Query: 61 aaggtttagcagtttcaagaaatgatgcagaaattatgaaaagcagttgaaaattaagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aaggtttagcagtttcaagaaatgatgcagaaattatgaaaagcagttgaaaattaagtc 466
Query: 121 atgtttctatgtaagtgcttatatttcaggcattaaagttaggatcactcatataaaa-t 179
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 465 atgtttctatgtaagtgcttatatttcaggcattaaagtcaggatcactcatataaaaat 406
Query: 180 agcatttgaacaggaacatatatatctcaaaatttttttttaaa----tcaaaattgttt 235
|||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct: 405 agcatttgaacaggaacatatatatctctaa---tttttttaaaaaaatcaaaatt---- 353
Query: 236 tctagagtatatataaggactgcacagtaaattgttaactccatacttgcatctactctg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tctagagtatatataaggactgcacagtaaattgttaactccatacttgcatctactctg 293
Query: 296 gacatttctaagtattgtgctcaaaatctgttctttttatgtagactcaagtatagagga 355
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||
Sbjct: 292 gacatttctaagtattgtgctcaaaatctgttctttttatatagactcaag-a-agaaga 235
Query: 356 agaagaagaagaagaaga 373
||||||||||||||||||
Sbjct: 234 agaagaagaagaagaaga 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 772
Length adjustment: 9
Effective length of query: 365
Effective length of database: 763
Effective search space: 278495
Effective search space used: 278495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_f23.g1 MSMg01no422_f23.g1 CHROMAT_FILE:
MSMg01no422_f23.g1 PHD_FILE: MSMg01no422_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:48 2005
(496 letters)
>mm_chr4_25838123_25839018
Length = 896
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%)
Strand = Plus / Plus
Query: 1 tctcctatctctcacttagaatacacaggctacatacaccaacacatatggttgttgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcctatctctcacttagaatacacaggctacatacaccaacacatatggttgttgagg 260
Query: 61 gaaacatacatccatgccagctaacaagctactctatatttgcctttagctctatgtatc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaacctacatccatgccagctaacaagctactctatatttgcctttagctctatgtatc 320
Query: 121 tgcactcaaggcttcactttcaaatttctaaatttccaaggtacaaactagcaattatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcactcaaggcttcactttcaaatttctaaatttccaaggtacaaactagcaattatct 380
Query: 181 gcttaatttcttttatcactagttaccaccacaatccatattttattttatttttacata 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gcttaatttcttttatcactagttaccaccacaacccatattttattttatttttacata 440
Query: 241 atatttttattgattatttaggaatttcatatcatgatttctgggcacactcactttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttttattgattatttaggaatttcatatcatgatttctgggcacactcactttctt 500
Query: 301 gtcctcccaggtctgcccctacacccttgtgaccgccacactggaaaaacaaaaacaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcctcccaggtctgcccctacacccttgtgaccgccacactggaaaaacaaaaacaaaa 560
Query: 361 caaaacaaaaaaagaaaaagaaaaacagctcatttttgttgttgttgttgcccatatgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaacaaaaaaagaaaaagaaaaacagctcatttttgttgttgttgttgcccatatgct 620
Query: 421 cactggagcatgatcaaagtcttggtgtccagtcccttaaagaaaactgagtccttcttt 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 cactggagcatgatcaaagtcttggtgtccagttccttaaagaaaactgagtccttcttt 680
Query: 481 actcttacgcctacca 496
||||||| ||||||||
Sbjct: 681 actcttatgcctacca 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
