XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCANAAATGCGCGGAANCCTT
GGAAAATCCAACAAAACGATTCCTGGAACCTAATGTCAGGATGTCTAAGC
TAATTTATCTGTTAAACTTCCTGTTGTGCACACCTTTCTAGCTAACCACT
TAACTCGGGTCTGTCGAATTGTTTGCTTATATAAATAATCCCTCTCCCTT
CCCCCTGAAGCCACAGAGTAAGATACTAGGATGTGGTTTACAATTTTGAA
AATCCCATATTTTGAGCATTTGGGGCTAAATCTATGTCCTCAAATACTGG
GTGTATTCAAAGCTGGTTGGAATAAAGATTTTTCAATGAGTATAGACTAT
TTTTTTGTGGTAATCTCTCGTGGGATCCTTTTAACATTAAAATCTCATAT
CTCTTGCTCTACTTAAACCTTATTCCACCTTCATAGCATACATTAGAGGT
TTTTATATCCTCACCTATTTCTTGTTTTTATTTGGCCACTTGATATCACA
CTTGTATGACCAAATCTCTTATTTACCTTTAGTATAGGAAAAAAATAAAT
GTTGTTTAATATATCCTGACCCCAAAACATTTCCTTTTAAAATTGGGAAA
TAACCTTTCCATATAAGGAAATTAAAAACAATGGGACCGGAAAAAGAAAA
AAACAAATTT

NTTTCCTTTTNNNNTTTTTTNCNNNNNNNCCCATGAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGTTTAGCTCTGTTCCCCATTTTTTGATAGGGATATTTGGTTG
TCTGGAGTCTAACTTCCTAAGTTCTTTGTAAATATTGGTTATTAGTTTTC
TATCCAATGGAGAATTGGTAAAGACCTTTTTCCAATCTGTTAGNTGCTGN
TTTTGGCCCTATTAAATGGATTCCTTTTGGCCTTACAGAAAGCTTTTGCC
AATTTTTAATGAAAAGTCCCCATTTTTGGGGGGGATTTCTTTGGGAACCC
TTAAAAAAACATTCCAAAAAATTTTCCTGGGGGGCCCCCCCGGGTTTTTT
TTTTTTTATTTCCCCACCCCCCCGGGCCCGTGGTTTAAAGCCCCCTTAAT
TGAAAGGGGGATATTCCTTTTTTGGGGGGAGAAAGAGTTTTAAACCCCCC
CCAAATTTGGGAAGGGGGGTTTAAAAAGAAAAAATATTTTTTTTATAGGG
GGGGAATATAAGTGTT

Query= MSMg01no422_g23.b1 MSMg01no422_g23.b1 CHROMAT_FILE:
MSMg01no422_g23.b1 PHD_FILE: MSMg01no422_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:53 2005
         (396 letters)



>mm_chr4_39464079_39464873
          Length = 795

 Score =  727 bits (376), Expect = 0.0
 Identities = 391/396 (98%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctggaacctaatgtcaggatgtctaagctaatttatctgttaaacttcctgttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 attcctggaacctaatgtcaggatgtctaagctaatttatctgttaaacttcctgttgtg 536

                                                                       
Query: 61  cacacctttctagctaaccacttaactcgggtctgtcgaattgtttgcttatataaataa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cacacctttccagctaaccacttaactcgggtctgtcgaattgtttgcttatataaataa 476

                                                                       
Query: 121 tccctctcccttccccctgaagccacagagtaagatactaggatgtggtttacaattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tccctctcccttccccctgaagccacagagtaagatactaggatgtggtttacaattttg 416

                                                                       
Query: 181 aaaatcccatattttgagcatttggggctaaatctatgtcctcaaatactgggtgtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaaatcccatattttgagcatttggggctaaatctatgtcctcaaatactgggtgtattc 356

                                                                       
Query: 241 aaagctggttggaataaagatttttcaatgagtatagactatttttttgtggtaatctct 300
           |||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 355 aaagctgggtagaataaagatttttcaatgagtatagactgtttttt-gtggtaatctct 297

                                                                       
Query: 301 cgtgggatccttttaacattaaaatctcatatctcttgctctacttaaaccttattccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cgtgggatccttttaacattaaaatctcatatctcttgctctacttaaaccttattccac 237

                                               
Query: 361 cttcatagcatacattagaggtttttatatcctcac 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 cttcatagcatacattagaggtttttatatcctcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 795
Length adjustment: 9
Effective length of query: 387
Effective length of database: 786
Effective search space:   304182
Effective search space used:   304182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)