BAC Information

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BAC

Clone NameMSMg01-422H12
Chromosome4 (Build37)
Map Location 45,199,612 - 45,327,718
singlet/doubletdoublet
Overlap geneFrmpd1, Rg9mtd3
Upstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneExosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422H12.T7 (MSMg01no422_h12.b1)MSMg01-422H12.TJ (MSMg01no422_h12.g1)
ACCAG516850AG516851
length722734
length of high quality
(start - end)		595 (52 - 646)267 (324 - 590)
definitionCHROMAT_FILE: MSMg01no422_h12.b1 PHD_FILE: MSMg01no422_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:55 2005CHROMAT_FILE: MSMg01no422_h12.g1 PHD_FILE: MSMg01no422_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,199,612 - 45,200,199)(45,327,452 - 45,327,718)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGGTTCCCTGGAGGAGCTGCCCCCCAGGAAGGTAGAAGGAAGGCAAGGGT
CTCAGCAGGGAGGTCATTTTCATGGAAAGGAACTGGATGACCACTGGCTT
GTAAAGTTCAGGTCAGCAAGGAGCATGGAATCCAGTGGAAGTGCAGAGCA
GGCAGAGCCCTCTGAGAGCAGAAGATAGGCAGAAGTGCCTTGGTCTCCGC
TTGGGATTTGGGTCCTCTGAGTTTCACTCTTCTCATTTATCAAAGGAAAT
TAAAGATAATTGTCTTTGCGCAAGATAGATCGTAGGTAGAAGCGTCTAGC
GTGGTGTTTGTATATAATAGGCATTTGGTCAGAATTGGATCCCTCTGTAG
TGTGTTCATGGGCAGCGAGTTCGGTGTGTTGCTGTGCACTCGTGGAATAT
AAAAATGGTATCTTTGTCTTAGTTTCTGCCTTGACTTAGAACCTTCCTAC
CAGGGCTGTGACAGCATGTTCATTCTCAGGGAACCTCCTGGTCCCAGAGA
TGGGCACTTGTTATCTGGAGGGGGCTCCAATCTGATACGGACATGAACAG
CTTCCAGTGTCCTGTANATACTAAACGTGGTGGAGGTTGCAGATGGGTTA
TATCAGAAGCCTCAATCCCTGCCTCCCACAAGCTTATCACTGTGTGCTCC
AGGACCCAGGCAGAAGGATTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAAGAACGTAGCCTTTTCCTGGAGAAACTCC
TTTCTTCAGTGCTTCAGGCCAGTTACGAGTTTCAAAGTAAGTAGACAGGA
TATCGAACACTGTCAGAAGGTAAACAGATGTTGGTTGACCGTTAGGGAGA
AGACTAGTAAAGGACTAATGTGGAAAAGGGGTGCTGTGGAATGTCTTCTC
TGCCCAGCTGTCCTAAGTCACGTGACGGTAGATCATGGGAAGAGTGGGGC
AAGGACACAGCCTCNACTTACTAGGCCTCAGCTTACACTGAACACTTGTG
AATGGACAACTGCAACCGAGGAACACAGCACCATGGGAATACCAACAAGG
GGCCTGACAGCCTGCAGTGGGAGGAGAGGCAGCTAAGATGCTCCTGAGCT
GACGCCTAGAGAACAAAGATACTGGCCAATGAAGGTAGGTGACAAGGTGT
TCTAGGCAAAGGGACACTTTTATTCAGGAAAGAAAACAAAAGGAGGGAAC
TCTCAATGGCCAGGCAGAATGGCTGCCAGCAAGTGCATGCAAGAGAGTCC
AGGCGTCAAAGGAAACTGAGTCAAGGGTACTACACTTTAAGCAAACCAGC
ATAGTGTTTTTATTCAATAGCCTTTGAGTAAACCGAGAACACAGAAGCCC
TTCCTAGACAGAGCATCAGTTAAAAGGCCTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_h12.b1 MSMg01no422_h12.b1 CHROMAT_FILE:
MSMg01no422_h12.b1 PHD_FILE: MSMg01no422_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:55 2005
         (595 letters)



>mm_chr4_45199405_45200399
          Length = 995

 Score = 1069 bits (553), Expect = 0.0
 Identities = 579/588 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   tggaggagctgccccccaggaaggtagaaggaaggcaagggtctcagcagggaggtcatt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tggaggagctgccccccaggaaggtagaaggaaggcaagggtctcagcagggaggtcatt 267

                                                                       
Query: 68  ttcatggaaaggaactggatgaccactggcttgtaaagttcaggtcagcaaggagcatgg 127
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 268 ttcatggaaaggaactggatgaccactggctagtaaagttcaggtcagcaaggagcatgg 327

                                                                       
Query: 128 aatccagtggaagtgcagagcaggcagagccctctgagagcagaagataggcagaagtgc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatccagtggaagtgcagagcaggcagagccctctgagagcagaagataggcagaagtgc 387

                                                                       
Query: 188 cttggtctccgcttgggatttgggtcctctgagtttcactcttctcatttatcaaaggaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttggtctccgcttgggatttgggtcctctgagtttcactcttctcatttatcaaaggaa 447

                                                                       
Query: 248 attaaagataattgtctttgcgcaagatagatcgtaggtagaagcgtctagcgtggtgtt 307
           ||||||||||||||||  ||| ||||||||||| |||||||||||||||| | |||||||
Sbjct: 448 attaaagataattgtcaatgcacaagatagatcataggtagaagcgtctatcatggtgtt 507

                                                                       
Query: 308 tgtatataataggcatttggtcagaattggatccctctgtagtgtgttcatgggcagcga 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgtatataataggcatttggtcagaattggatccctctgtagtgtgttcatgggcagcga 567

                                                                       
Query: 368 gttcggtgtgttgctgtgcactcgtggaatataaaaatggtatctttgtcttagtttctg 427
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 568 gttcggtgtgttgctgtgcactcgtggaatataaaaatggtgtctttgtcttagtttctg 627

                                                                       
Query: 428 ccttgacttagaaccttcctaccagggctgtgacagcatgttcattctcagggaacctcc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccttgacttagaaccttcctaccagggctgtgacagcatgttcattctcagggaacctcc 687

                                                                       
Query: 488 tggtcccagagatgggcacttgttatctggagggggctccaatctgatacggacatgaac 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tggtcccagagatgggcacttgttatctggagggggctccaatctgatacggacatgaac 747

                                                           
Query: 548 agcttccagtgtcctgtanatactaaacgtggtggaggttgcagatgg 595
           |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 748 agcttccagtgtcctgtaaatactaaacgtggtggaggttgcagatgg 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no422_h12.g1 MSMg01no422_h12.g1 CHROMAT_FILE:
MSMg01no422_h12.g1 PHD_FILE: MSMg01no422_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:55 2005
         (267 letters)



>mm_chr4_45327252_45327918
          Length = 667

 Score =  509 bits (263), Expect = e-149
 Identities = 266/267 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcctcagcttacactgaacacttgtgaatggacaactgcaaccgaggaacacagcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggcctcagcttacactgaacacttgtgaatggacaactgcaaccgaggaacacagcacca 408

                                                                       
Query: 61  tgggaataccaacaaggggcctgacagcctgcagtgggaggagaggcagctaagatgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgggaataccaacaaggggcctgacagcctgcagtgggaggagaggcagctaagatgctc 348

                                                                       
Query: 121 ctgagctgacgcctagagaacaaagatactggccaatgaaggtaggtgacaaggtgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctgagctgacgcctagagaacaaagatactggccaatgaaggtaggtgacaaggtgttct 288

                                                                       
Query: 181 aggcaaagggacacttttattcaggaaagaaaacaaaaggagggaactctcaatggccag 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aggcaaagggacacttttatccaggaaagaaaacaaaaggagggaactctcaatggccag 228

                                      
Query: 241 gcagaatggctgccagcaagtgcatgc 267
           |||||||||||||||||||||||||||
Sbjct: 227 gcagaatggctgccagcaagtgcatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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