BAC Information

Click to search

BAC

Clone NameMSMg01-422O03
Chromosome4 (Build37)
Map Location 73,081,714 - 73,082,273
singlet/doubletsinglet
Overlap geneLOC100039726
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246
Downstream geneLOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422O03.T7 (MSMg01no422_o03.b1)MSMg01-422O03.TJ (MSMg01no422_o03.g1)
ACCAG517168AG517169
length725723
length of high quality
(start - end)
564 (59 - 622)334 (66 - 399)
definitionCHROMAT_FILE: MSMg01no422_o03.b1 PHD_FILE: MSMg01no422_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:26 2005CHROMAT_FILE: MSMg01no422_o03.g1 PHD_FILE: MSMg01no422_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGG
TTTTACCCAGGTATGGTGGCAGAAACCTTAATCACAGTATTGGGAGACAT
AGGCAAGTTTGAGGCTAACCTGGTCTACATAGCAAGTTCTAGGCCAAGCC
AGAGTTACATTTTTAAGACCCTGACTTAAAATAAAAATAAAAGCCATGTG
ACACTCATATTTAAGCAAATGTCAGAATTTACAGTACCATTGTAGCATTT
GCAAACATAAAGATAATACTGAGCATATTTTTAAGGGAAAACAAAAAGCA
TAGAGGTAAGATCTTGTAAGATGTGGTTTATTTTTTTAATTTAAAATAAA
TGGATCAAGTTTCAATAGTGCCCCCTCACACAATCAAAATGAGAACAATG
AGTGGATTTCAGCCCTGATTTTACCACTGACAGGACCACGACTGTGCATG
GGTCACAATTCAAAGCCCTATGAAGCCCTTTCAATACTCTGTACTAGCTA
GAAATGGGACAAAATACAACTTGAAAATAAGAAAAATACTGCTTTTCATA
CAAATAAAGACAGAGTCAAACATCAAGTCTCCCAAATCATGGCTAAATTT
CTAGTGACTCCAAGTTGGAAGTTCTCTACACTGACCTCCGCTTGTGAACT
GATCTATGGACTGGACCATTGCTGGTGCCTAGGTTGCACAGGTCTGACTT
CAAAGCTGATGGAACAATTTTGTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTTAGCTCTGTAACCAATTTTGAATGGGGTT
ATTTGATTTTCTGAAGTCTAGTTTATTGAGTTCTTTATATATATTGGATA
TTAGTCATTATCTGATTTAGGATTGGTAAAGATCCTTCCCCAATCTATAG
CTGGCCTTTTTGTCTTATTGAATGTGTCTTTTGCCTTACAGAAGCTTTGC
AAGTTATGAGGTCCCATTTGTCAATTCTCAATATTACAGCACAAGCCATT
GATGTTCTCTTCTTTTTTTTTCCCCCTATGACCATATCTTTAGGCTTTCC
CCCACTTTTTCCTCTATAAGTTTCAGGGTCTCTGGTTTTATGTGGAGTTC
CGTGATTCATTTATATTTGAGCTTTGTACACAGAGATATGAATGGATCAA
TTTGCATTCTTCTACAAGATAACTGCCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTTTTTCACTGGATGGCTTTGGCTCCATTGTCAAAGAT
CAAGCGACCGTATGTGTGTGAGTTTATTTCCGGTTGATCAGTTAAATCCA
TTGATCCACCTGTCCGGTATAGGACCACCGCGATGCATTTTTTTCATAAC
TCCCCTGTTATTCCCCTTATAATCTCAACTTGGGGGTTTTCTCCTGAGGC
CTTTCTTATGATTATACCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_o03.b1 MSMg01no422_o03.b1 CHROMAT_FILE:
MSMg01no422_o03.b1 PHD_FILE: MSMg01no422_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:26 2005
         (564 letters)



>mm_chr4_73081510_73082473
          Length = 964

 Score =  967 bits (500), Expect = 0.0
 Identities = 547/564 (96%), Gaps = 4/564 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtatggtggcagaaaccttaatcacagtattgggagacataggcaagtttgaggctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aggtatggtggcagaaaccttaatcacagtattgggagacataggcaagtttgaggctaa 264

                                                                       
Query: 61  cctggtctacatagcaagttctaggccaagccagagttacatttttaagaccctgactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctggtctacatagcaagttctaggccaagccagagttacatttttaagaccctgactta 324

                                                                       
Query: 121 aaataaaaataaaagccatgtgacactcatatttaagcaaatgtcagaatttacagtacc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 325 aaataaaaataaaagccatgtgacactcatatttaggcaaatgtcagaatttatagtacc 384

                                                                       
Query: 181 attgtagcatttgcaaacataaagataatactgagcatatttttaagggaaaacaaaaag 240
           || ||||||||||||||| ||||||||||||||| ||||||||||||||||   ||||| 
Sbjct: 385 atcgtagcatttgcaaacgtaaagataatactgaacatatttttaagggaa---aaaaa- 440

                                                                       
Query: 241 catagaggtaagatcttgtaagatgtggtttatttttttaatttaaaataaatggatcaa 300
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagaggtaaaaccttgtaagatgtggtttatttttttaatttaaaataaatggatcaa 500

                                                                       
Query: 301 gtttcaatagtgccccctcacacaatcaaaatgagaacaatgagtggatttcagccctga 360
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 501 gtttcaatagtgccccctcacacaatcaaaatgagaacaacgagtggatgtcagccctga 560

                                                                       
Query: 361 ttttaccactgacaggaccacgactgtgcatgggtcacaattcaaagccctatgaagccc 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaccactgacaggaccaagactgtgcatgggtcacaattcaaagccctatgaagccc 620

                                                                       
Query: 421 tttcaatactctgtactagctagaaatgggacaaaatacaacttgaaaataagaaaaata 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcaatactctgtactaactagaaatgggacaaaatacaacttgaaaataagaaaaata 680

                                                                       
Query: 481 ctgcttttcatacaaataaagacagagtcaaacatcaagtctcccaaatcatggctaaat 540
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 681 ctgcttttcatacaaataaagacagagtcaaccagcaagtctcccaaatcatggctaaat 740

                                   
Query: 541 ttctagtgactccaagttggaagt 564
           ||||||||||||||||||||||||
Sbjct: 741 ttctagtgactccaagttggaagt 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)