Query= MSMg01no422_o15.b1 MSMg01no422_o15.b1 CHROMAT_FILE:
MSMg01no422_o15.b1 PHD_FILE: MSMg01no422_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:28 2005
(626 letters)
>mm_chr4_25623815_25624840
Length = 1026
Score = 1089 bits (563), Expect = 0.0
Identities = 608/623 (97%), Gaps = 3/623 (0%)
Strand = Plus / Minus
Query: 5 gaattctcttactgcaccgttggctttctttctgcacttctgacctctgctgctctataa 64
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 657 gaattctcttactgcagtgttggctttctttctgcacttccgacctctgctgctctgtaa 598
Query: 65 tacggtgattgtgttcttctcttcttctcactgtattttccaaaaactgctcttcctttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tacggtgattgtgttcttctcttcttctcactgtattttccaaaaactgctcttcctttt 538
Query: 125 ctccttgagaaatatcccagtgaaataatgagcctgggttagctcacattatgcgatgtg 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 537 ctccttgagaaatatcccagtgaaataatgggcctgggttagctcacattatgcgatgtg 478
Query: 185 cccggttctatctctcttggaaaactaattgctgcactatgaacagatgactcacttcaa 244
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 477 cccggttctatccctcttggaaaactaattgctgcactacgaacagatgactcacttcaa 418
Query: 245 tgtcacccttgagagggagcttgaatttgaagattagacaaaataataaatgattcccat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgtcacccttgagagggagcttgaatttgaagattagacaaaataataaatgattcccat 358
Query: 305 atctcccatttactggctgacttgacatttcctgcctaattcacactttacaagaaccct 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 357 atctcccatttactggctgacttgacatttcctgcctatttcacactttacaagaaccct 298
Query: 365 gttttaaaagatagctgtgacatagtgaaattatatagaaaatatatagcacacccttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gttttaaaagatagctgtgacatagtgaaattatatagaaaatatatagcacacccttca 238
Query: 425 tacatagaagaaaccaccagagaaaaagataaatcttgtttgtgttttttctttttttc- 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tacatagaagaaaccaccagagaaaaagataaatcttgtttgtgttttttctttttttct 178
Query: 484 tttttttttgtttcactaggggacttatgagtcttagctt-cagacattcattgtcacta 542
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 177 tttttttttgtttcactaggggacttatgagtcttag-ttccaaacattcattgtcacta 119
Query: 543 cctggctcttagacttaagccaggttaattaactattctcatttaaaatgataacatccc 602
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cctgactcttagacttaagccaggttaattaactattctcatttaaaatgataacatccc 59
Query: 603 aaactgaaagactacagtaaaac 625
|| ||||||||| ||||||||||
Sbjct: 58 aagctgaaagacaacagtaaaac 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_o15.g1 MSMg01no422_o15.g1 CHROMAT_FILE:
MSMg01no422_o15.g1 PHD_FILE: MSMg01no422_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:28 2005
(329 letters)
>mm_chr4_25577358_25578082
Length = 725
Score = 505 bits (261), Expect = e-147
Identities = 307/325 (94%), Gaps = 9/325 (2%)
Strand = Plus / Plus
Query: 1 taggaggcaaatcttctcaaataataaacacacagagaaacatacccacacacatgcaca 60
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct: 201 taggaggcaaa---tctcaaataatcaacacacagagaaacatacacacacacatacaca 257
Query: 61 cacagagagaaatttactaaattcaaatacaaaggaaaaaaataaagaaaaaaaagccag 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 258 cacagagagaaatttactaaattcaaatacaaagg-aaaaagtaaagaaaaaaaagccag 316
Query: 121 aatattgagaattagggagcaactcatattcttaactggaatatgagttaaataaagaaa 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 aatattgagaattagggagcaactcatattcttaactggaatatgaattaaataaagaaa 376
Query: 181 cttgaggctcccaatacacatacagtagaagacttcatggcctgtcaagaagacttgaag 240
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 catgaggctcccaatacacatatagtagaagacttcatggcctgtcaagaagacttgaag 436
Query: 241 gtctgtgttcatttagagatgatccacctaaccctcaagagactggaggatccagagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 gtctgtgttcatttagagatgatccacctaaccctcaagagactggaggatccagag-gt 495
Query: 301 ttagaggtcaggtgggggt-ggggg 324
| |||| ||||||||| |||||
Sbjct: 496 t---aggtggggtgggggttggggg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 725
Length adjustment: 9
Effective length of query: 320
Effective length of database: 716
Effective search space: 229120
Effective search space used: 229120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
