BAC Information

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BAC

Clone NameMSMg01-423A13
Chromosome4 (Build37)
Map Location 27,124,110 - 27,124,700
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423A13.T7 (MSMg01no423_a13.b1)MSMg01-423A13.TJ (MSMg01no423_a13.g1)
ACCAG517284AG517285
length727731
length of high quality
(start - end)
291 (12 - 302)591 (64 - 654)
definitionCHROMAT_FILE: MSMg01no423_a13.b1 PHD_FILE: MSMg01no423_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:37 2005CHROMAT_FILE: MSMg01no423_a13.g1 PHD_FILE: MSMg01no423_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTAAACGACTCACTTTCAAAAGAGGATCCGCGGAATTCCTTTTT
TCGTACAAACTATTTGGAGTTCTGTAGGCTTCTTGTATGTTCATGGGCAT
CTCTTTCTTTAGGTTGGAGAAGTTTTCTTCTATAATTTTAAAGAAGATAT
TTACTGGCCGTTTAAGTTGGAAATCTTCCTTCTCATCTATATCTATTATC
CTTTGGCTTGGTCTTCTCGCTGTGTCCTGCATTTCCTGGACGTTTTGTGT
TAGGATCTTTTTGCATTTCACATTTTCTTTGATTGTTGTGTCAAAGTTTT
CTTATGTTTCTTCTGCCCTTGAGATTCTCTCTTCTATCTTTTGTATTCTC
TTTTGTTATGCTTGCTTGCATCATTGTCTTCTGACTTCTTTTCTAGGNTT
TATATTTTCAGAGTGGTCTCCCTTTGTGATTTCTTTAGCGCTTCTACTTC
CATTTGTAGATCCTGGATGGCTTTGTTCAATTCTTTCACCTGATTGGATG
TGTTTTCTTGTATTTCTTTATGGGAGTTATTTATTTCCTTCTTAAAATCT
TATATCCTCCTTCTGAAAAGTGACTTTAGAACCCTATCTTGTTTTTCTGG
GGCGATGGTATACCTAGGACTTGCCATGTTTTTTATTTTTTGATTCTGAC
GAAGCCCCTTAACCCTGTCTCCTGTTGTTTCCGCGTCTTATCTTGATCCT
CTCCCTCTGAATATCTTCACGGCCTGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTGAAGAAAATATGACATTCACATATTATGGATCCT
GTAATATAACATCCAATTATCATTCATAGGTGCTTCAATTTCTCCTAAAT
TTATACATGTGAAAAATATAATCAGCTACATTTAGTCACCAACAGAGATA
TGGAGGTGGGACAGGAAAGTATGACCTTTAGATGTCAGATGTAAATGGAG
AGGTTAATAGCACCACTAACACAAACCAACAATATAGAAACAGAAGTGAC
CTTGTATTGTATAAGAGAAGACTCTATTATAGGTTTAAGCCACAGTATTA
AAATTATCACTATACATTTACCACTGTTTACAATGTATTTTATACAATTT
CTCCTGTTGCTGTATGATATTTTATGCTTGTTTTCAGAGACAGAATCAAT
GCTTTCTTTATTTTACAATATCATGTGTTGTATATTTTCAACAACACTAT
ATATGTCTTCTGTCATGGCCAAATATCAATTTAGTTCATCATCACAGTTA
GTATATTAGAGTATATGTACAGCGAACAGAGAGTAATGGAACTGATCACT
TGTGAGTGATGACAGAGACACAGACAGAAATTGGATATACTAAAAGGTGA
AGATTGGAACAGATTTTATTTTCTTCTCAGGATTATAGATCAAACCAAGA
GGTATGCAACTTAGTGAATGTTTCTTCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_a13.g1 MSMg01no423_a13.g1 CHROMAT_FILE:
MSMg01no423_a13.g1 PHD_FILE: MSMg01no423_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:37 2005
         (591 letters)



>mm_chr4_27123910_27124900
          Length = 991

 Score = 1096 bits (567), Expect = 0.0
 Identities = 585/591 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaagaaaatatgacattcacatattatggatcctgtaatataacatccaattatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tttgaagaaaatatgacattcacatattatggatcctgtaatataacatccaattatcat 732

                                                                       
Query: 61  tcataggtgcttcaatttctcctaaatttatacatgtgaaaaatataatcagctacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tcataggtgcttcaatttctcctaaatttatacatgtgaaaaatataatcagctacattt 672

                                                                       
Query: 121 agtcaccaacagagatatggaggtgggacaggaaagtatgacctttagatgtcagatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agtcaccaacagagatatggaggtgggacaggaaagtatgacctttagatgtcagatgta 612

                                                                       
Query: 181 aatggagaggttaatagcaccactaacacaaaccaacaatatagaaacagaagtgacctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aatggagaggttaatagcaccactaacacaaaccaacaatatagaaacagaagtgacctt 552

                                                                       
Query: 241 gtattgtataagagaagactctattataggtttaagccacagtattaaaattatcactat 300
           | |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggacagtagaagagaagactctattataggtttaagccacagtattaaaattatcactat 492

                                                                       
Query: 301 acatttaccactgtttacaatgtattttatacaatttctcctgttgctgtatgatatttt 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 acatttaccactgtttacaatgtattttatacaatttctactgttgctgtatgatatttt 432

                                                                       
Query: 361 atgcttgttttcagagacagaatcaatgctttctttattttacaatatcatgtgttgtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgcttgttttcagagacagaatcaatgctttctttattttacaatatcatgtgttgtat 372

                                                                       
Query: 421 attttcaacaacactatatatgtcttctgtcatggccaaatatcaatttagttcatcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attttcaacaacactatatatgtcttctgtcatggccaaatatcaatttagttcatcatc 312

                                                                       
Query: 481 acagttagtatattagagtatatgtacagcgaacagagagtaatggaactgatcacttgt 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 311 acagttagtatattagagtatatgtacagtgaacagagagtaatggaactgatcacttgt 252

                                                              
Query: 541 gagtgatgacagagacacagacagaaattggatatactaaaaggtgaagat 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gagtgatgacagagacacagacagaaattggatatactaaaaggtgaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)