BAC Information

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BAC

Clone NameMSMg01-423C17
Chromosome4 (Build37)
Map Location 119,910,493 - 119,910,738
singlet/doubletsinglet
Overlap genenone
Upstream geneLepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
Downstream geneFoxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423C17.T7 (MSMg01no423_c17.b1)MSMg01-423C17.TJ (MSMg01no423_c17.g1)
ACCAG517388AG517389
length778764
length of high quality
(start - end)
78 (54 - 131)249 (51 - 299)
definitionCHROMAT_FILE: MSMg01no423_c17.b1 PHD_FILE: MSMg01no423_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:47 2005CHROMAT_FILE: MSMg01no423_c17.g1 PHD_FILE: MSMg01no423_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTAAACGAATANTATTCAAAAGAATCCGCGGAATCAAAAATTTGCAAA
TATTTTTATAATTTGCTATTTTCTTTTTTTTAAATCTGTGTTTGGGGAGG
GGGGTTCTGTTCTATGGTTACTTAATTTTTTGGGCAGTCAAATGCATTGA
CCTTGAAAGAACACTGACATCCAACTGGGGCTTTGAAAGCTACTTTCCAA
TAGCATTACAAAAATCTTCCAACAGCCTTGGCATTTTCACAAGCTTGTTT
CTAGGTCATGTCTGTTTGCATGAGATTTCAAATAGGGCCTCACTATGTAT
TTTTTTTTATGTCCTCAAACTTGGTATTCTCCTGCCTCAGTCTCCCCAGT
GCTCAGGTTACAGGTACATGCTGCCATGCCTGGCATCCCAGTTGGTTCTG
AATCTAGTTATCTAGGAAGAGTAACCTCAGCTGACTAAATGCCTCCATCA
TATTGTCTGCGGCCTTTTCTGGATTACCTTTTCTTGAATAATGATTGATG
AGTGAGGCTCTACTTTATTTGTTCATATCATATTTGACCTGTCTCCATAT
TCCTTCCCCAGATATCCTCGTCCTACCACCTTTGTTAACTCTTTTTCTAC
TACTGTATATCTTTATTCTTCACAGCCAAATATCTCCCTACCCTCCTCTT
TTCTTTTTCCAATTTTCTTTACCTTTCTTCCAAAAACTCCTCTTAATACT
TCCCCCCAATCCTCCTCTCACTCCTTCTTTATTCACATTTTCCTTCACCT
CCATAAACGCCCTGTCATCATCACCTCN
CTGGAGGCCGCCTGTTCTCAAATTTAGGTGAACTATAGAAGTTTCGCGAA
ATTCTCTGAGGTTTCACACACTCCCTCATCCATCACTAACTGGATCTTTC
TCCCTAGAGCAGGGCTTCTGGAGAGTGGGACCTGTATACCTACTGTCCTG
TCCCCATGACTGTCACTTACTGGTGATCACAGAGTGTCAAATGAATGGAG
ACCATGTGCCCTAGTGTAGGACTCTGGGGTATTCTGTGCACAGTGGTATA
ACAGACACTTAGGGAGTTCTTTCCTAAGCTGTGTGTGGTGATGCCTTTTT
GTTATCCCAGTATTTGGAAAGCGGAGGATTAGAGATTCAAGGTCATCCTT
GGCTATATAGTGAGCATGAGGTCTGCCTGGGCTGCATGAGACCCCGTCAC
AGAAAATGATCACCGGTTCCTGTCCTAAAAAGCTAACTCACTCAAGCCAC
AGATGCCGTATAGGTATGCTGCAGGTTGACCCTTGTTCGACTGCCTTCCT
CTTGAACCTGTCTTCATTACTGCAGGCTTCCTGCTGATCTTTGCACATAT
AGTTGTGGATCACTCAAGCAGTCTTCCGTTGACGTTATTACCGCTATTCC
TCGACAGTAGACCCTTTTCTTTTTAACTATCCGAAGTGTTGTTATGTTCA
CCTTTTCCCTGTGCCCTTTTTTGACCTTCCCCCCTTTTTCCCCTCCTCTT
TCCCTCCTTTTTCTTTCCCTTTATTTTTCTCCCTTCTTGTATTTTTTTTT
CCCCTTTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_c17.g1 MSMg01no423_c17.g1 CHROMAT_FILE:
MSMg01no423_c17.g1 PHD_FILE: MSMg01no423_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:47 2005
         (249 letters)



>mm_chr4_119910293_119910941
          Length = 649

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctctgaggtttcacacactccctcatccatcactaactggatctttctccctagagc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 446 attctctgaggtttcacacactccctcatccatcacttactggatctttctccctagagc 387

                                                                       
Query: 61  agggcttctggagagtgggacctgtatacctactgtcctgtccccatgactgtcacttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agggcttctggagagtgggacctgtatacctactgtcctgtccccatgactgtcacttac 327

                                                                       
Query: 121 tggtgatcacagagtgtcaaatgaatggagaccatgtgccctagtgtaggactctggggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 326 tggtgatcacagagtgtcaaatgaatggagaccatgtgccctagtgtaggactctggggg 267

                                                                       
Query: 181 attctgtgcacagtggtataacagacacttagggagttctttcctaagctgtgtgtggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attctgtgcacagtggtataacagacacttagggagttctttcctaagctgtgtgtggtg 207

                 
Query: 241 atgcct 246
           ||||||
Sbjct: 206 atgcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)