BAC Information

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BAC

Clone NameMSMg01-423O24
Chromosome4 (Build37)
Map Location 26,966,105 - 26,966,504
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423O24.T7 (MSMg01no423_o24.b1)MSMg01-423O24.TJ (MSMg01no423_o24.g1)
ACCAG517975AG517976
length765769
length of high quality
(start - end)		452 (33 - 484)400 (64 - 463)
definitionCHROMAT_FILE: MSMg01no423_o24.b1 PHD_FILE: MSMg01no423_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:44 2005CHROMAT_FILE: MSMg01no423_o24.g1 PHD_FILE: MSMg01no423_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCT
TTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCACC
TTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGA
CGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTG
TCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTT
TTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAA
GTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTG
ACCTTAGTACAAGGAAATAAGTATGGATCGATTCTCATTCTTCTACATGA
TAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCC
ACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGGACCCTAAGTGGGGG
GGGTCATTTCCGGGCCTTCCATTCTATTCCTTTGGGCTACCTGTCTGCCT
CTTTTCAGTACCCTGCGGTTTTTACAAAATGCTTTGTAGAAAATTTTTTT
TTACGCTTTGGGTTTCCCCCAAGGCTTTTTTTCCCTTTATATAACCCCCC
CCTCCCTATTTTTTGTTTTTCTTACACTTATTACACCCTTTTTTTTTTTT
CCCCTTTTTTCCCTG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTTAGTCAGTTAAGTCTGTATTTTTTAGGTGATACT
AGCCTGAATAAAGCTGACAAGTAATGCTATGTAGAAGAAAATCCTTTACT
CTGAATCTTCTGGGGCTGAGATAATACAAATTTTAAATGCAGCATTCTGA
GTGTCTAATCTAATTTATAAATATCATATTTTCCAAAATCTCATTCAAAT
TTAATGTTCATACTCATGTTCTTGCAGACTGAGTTTTTAAATTCCCCATT
TCTCCTGTTCTTATATTCATCATATTGATGGGTGTCATATCAAATGTTTT
CACAGCCCTGGTCAGCTATACTTAATGCAGACAGTTATTTATACTCCAAA
ATAGTACTCTTGATTTTCTGTACTCCTACTGAGTGAGAAACAAGTCTTTT
CTAGAACATCATGTANGAAATTAAATAACAAATTTAAACTATGTAGCTTC
ACCTGTAATACTACAATTAGGGAATATACTGTCCTCTTCTCCTGGCCTCA
TTCACTGAGGAACACCAATACTGAGAACACCCCAAGAACAAGGGTCTCTT
TTGTATTAGGACACCCCAACAATTCCTATTAAAGAATATCTTAATCCCGG
TTTCTGGGGCCGAAAAAAATTTTGGGTTTTTATTTTACCCCGCTTAAAAA
ATTTTTTCCGGTATTTGGATTCTGAACTCCAAAAATTTTTTATTGCACTG
GCCCTGTTTATGAAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_o24.g1 MSMg01no423_o24.g1 CHROMAT_FILE:
MSMg01no423_o24.g1 PHD_FILE: MSMg01no423_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:45 2005
         (400 letters)



>mm_chr4_26965905_26966704
          Length = 800

 Score =  704 bits (364), Expect = 0.0
 Identities = 391/400 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttagtcagttaagtctgtattttttaggtgatactagcctgaataaagctgacaagta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 600 atttagtcagttaagtctgtattttttaggtgatactagcctgaataaagttgataagta 541

                                                                       
Query: 61  atgctatgtagaagaaaatcctttactctgaatcttctggggctgagataatacaaattt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atgctatgtagaagagaatcctttactctgaatcttctggggctgagataatacaaattt 481

                                                                       
Query: 121 taaatgcagcattctgagtgtctaatctaatttataaatatcatattttccaaaatctca 180
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 480 taaatgcagcattctgaatgtctaatataatttataaatatcatattttccaaaatctca 421

                                                                       
Query: 181 ttcaaatttaatgttcatactcatgttcttgcagactgagtttttaaattccccatttct 240
            ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 420 ctcaaatttaacattcatactcatgttctttcagactgagtttttaaattccccatttct 361

                                                                       
Query: 241 cctgttcttatattcatcatattgatgggtgtcatatcaaatgttttcacagccctggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cctgttcttatattcatcatattgatgggtgtcatatcaaatgttttcacagccctggtc 301

                                                                       
Query: 301 agctatacttaatgcagacagttatttatactccaaaatagtactcttgattttctgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agctatacttaatgcagacagttatttatactccaaaatagtactcttgattttctgtac 241

                                                   
Query: 361 tcctactgagtgagaaacaagtcttttctagaacatcatg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcctactgagtgagaaacaagtcttttctagaacatcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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