Query= MSMg01no424_a08.b1 MSMg01no424_a08.b1 CHROMAT_FILE:
MSMg01no424_a08.b1 PHD_FILE: MSMg01no424_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:51 2005
(651 letters)
>mm_chr4_52277266_52278316
Length = 1051
Score = 801 bits (414), Expect = 0.0
Identities = 435/442 (98%)
Strand = Plus / Minus
Query: 5 gaattctcatttacataaaaactactctactcttttatgttatttatttcagtctacctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaattctcatttacataaaaactactctactcttttatgttatttatttcagtctacctc 383
Query: 65 actcaagaaaactttttccagaagaaaagtcctctgtaagtacctgttaaagtggctcct 124
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attcaagaaaactttttgcagaagaaaagtcctctgtaagtacctgttaaagtggctcct 323
Query: 125 ttcaaaggaagcagcttacaaaagaatgagattggcttactgatggtaagattgtattgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcaaaggaagcagcttacaaaagaatgagattggcttactgatggtaagattgtattgt 263
Query: 185 gtgtagaagccatatgctgatctcattctgctttttaaatcatttattacggagttagta 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 gtgtagaagccatatgctgatctcattctgctttttaaatcatttattaccgagttagta 203
Query: 245 atacaattacacaattcatcccttcccttttcttcctctaaatgctctttaacaaaaatc 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atacaattacacaattcaccccttcccttttcttcctctaaatgctctttaacaaaaatc 143
Query: 305 tcttcttgctttctttcaaatttatgccctttttgcataattgttgttatgtacatatat 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 142 tcttcttgctttctttcaaatttatgccctttttgcataattgttgttatatacatatat 83
Query: 365 gcgcatgtatatacatatatattcctaaatacagcctgctttgtctgttctatgttctca 424
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 82 gtgcatgtatatacatatatattcctaaatacaacctgctttgtctgttctatgttctca 23
Query: 425 ggtctgttcatttggtagacta 446
||||||||||||||||||||||
Sbjct: 22 ggtctgttcatttggtagacta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_a08.g1 MSMg01no424_a08.g1 CHROMAT_FILE:
MSMg01no424_a08.g1 PHD_FILE: MSMg01no424_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:51 2005
(543 letters)
>mm_chr4_52102015_52102957
Length = 943
Score = 980 bits (507), Expect = 0.0
Identities = 531/543 (97%), Gaps = 8/543 (1%)
Strand = Plus / Plus
Query: 1 ttattccacatggtcagattaaagaaattggaaaggtaccactaggagtggaaatgggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattccacatggtcagattaaagaaattggaaaggtaccactaggagtggaaatgggac 260
Query: 61 ccttggtaaacagaggtggccagttcaaatcttccactagccacttaccaacacttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttggtaaacagaggtggccagttcaaatcttccactagccacttaccaacacttcaga 320
Query: 121 ttctgaagaggaattaaatgatttgtgactcttgagatgtattctaatacaaacatgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgaagaggaattaaatgatttgtgactcttgagatgtattctaatacaaacatgaat 380
Query: 181 taaatagacattactaaataaattttactgtgttcaatgacatttttattatacttattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatagacattactaaataaattttactgtgttcaatgacatttttattatacttattc 440
Query: 241 acacacattaactgcatcatttaatgagttttatcataatgttaccatgaaagtatatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacattaactgcatcatttaatgagttttatcataatgttaccatgaaagtatatac 500
Query: 301 catgttctattctctcaatccctcccttctaatgcatgccttcagcttcctttccattcc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgttctattctttcaatccctcccttctaatgcatgccttcagcttcctttccattcc 560
Query: 361 tagcagtacctttcctactttcagattatcttttttaaatttctcttcactttgttttta 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 tagcagtacctttcctactttcagattatctttttttaatttctcttcactttgttttta 620
Query: 421 attgtttcttttaatttacacatatgaaagaagatatacccatctttttgtacctggctt 480
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgttt-----aatttaaacatatgaaagaagatatacccatctttttgtacctggctt 675
Query: 481 atttcattaccatgagactcaagttccataaattttactgaaaatgtgtttatatatatg 540
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 676 atttcattaccatgagactcaagttccataaatgttactgaaaatgtgtt---atatatg 732
Query: 541 cat 543
|||
Sbjct: 733 cat 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
