NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATTATTACAAAACAGGAGTTATAGATGCAGATATACTGGGCA
GAAAATATACTGATTCTTCACTGTTCTCAATGGCCAACTAGATAGTTGTA
TTTAAGTAAATACATGTTTGAGAATAAATGCAGGCATTTTAGAAAATAAG
AATAATAAACTTGGAATTGTTAGAAGTATAGAATATATTTTCCAAATTTT
TTGTTTGGCTCTGCTAAGCCTTTGGATTTCATGTATACCTTACCTTGAAA
GTGCTGTTTATCAAGTCATCCAAAGAAAGTTTGTTTTAGGGCACCTAAAG
CACTATCTACAGAACTTAAATCCTTATATGTATGACACCAGATGATTTGT
ACATCACCTATGCCCAACTTCTAGTGTCACAAGGCATTTCAGAGTTTCTT
AAACTGCCCATCGCATGTATGGACTGTTGAAACATTAGCTGCCTAGGATT
TTTAACAAGGTAATAAAGACTCTAACAGATTTAGTGCAAATATAAGTAAT
TTTCCTGAACATTCTTGATGCATGGTTAGTGAGCATCTTAGAGACTGAGG
ACCATCATGAAGAGAAGCCATCAGGAGGTTTCTTTGAATGCTGACAATGA
AACAAAGATGCACACAATATAATTGTTCTTGGCGGAGGAACACAAATGAA
GTANATGGAATGAAATACAGTAATAATGAAN

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATGTTCAATGAGCTGTGTG
GATGTTGTCCTAAGCAATAGGGCACCACTGTCCATTTGCAGAGGACAACC
TTTTGTCTTTAGTATCAGCCTGAGTTGTTTGGAGGATTTCTATGGGACAC
CCTTTGAAAACTGTATGAAACCCAGTCGAGGTACTGGAAACCTTGCCAGG
TTACAAGAGTTAGCCAATTGAGACTCCATATCTAGAAGTCTATGTTAAGA
TCCCTGCATCTCTGGGATGATTTTTATTTGATCATGATGGATGTTGCTTT
TGATCTGTTCTTGGATTCAGTATTCAAATATTTTATTGAGTATTTTTGCA
TCAATGTTCATGAAGAAAATTGGGCTGTAATTCTCTTTGTTGAGTGTTTG
TGCGGTCTGGTTATCAGGTATCTGCTGCCTCTTACAATGATTTTGAAAAT
GTTTCTTTATTCTATTTTGTGAAATATCTTTGTGCGTATTGCCAGGAATA
TTTTGATAATCTATTACAATTCTACCTCTAACACTATTTGACCCAGTGAT
TTTCTTCCGTTTGGAAATACCTTTTATGTCTCGCCCTCCATTTTCCCCAG
CGATTATATGTTCTATTTTACACTTTCCGTATCCTGTACTTTTGATTCTA
CCCTCCCTGACAATGTGGATATCCTGTCCACACACACCATTAATTACCTC
CATTTTTATTTCTTCGCCTTCTCN

Query= MSMg01no424_a12.b1 MSMg01no424_a12.b1 CHROMAT_FILE:
MSMg01no424_a12.b1 PHD_FILE: MSMg01no424_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:52 2005
         (682 letters)



>mm_chr4_92879332_92880413
          Length = 1082

 Score = 1222 bits (632), Expect = 0.0
 Identities = 664/675 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaattattacaaaacaggagttatagatgcagatatactgggcagaaaatatact 64
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gaattcaattagaataaaacaggagttatagatgcagatatactgggcagaaaatatact 820

                                                                       
Query: 65  gattcttcactgttctcaatggccaactagatagttgtatttaagtaaatacatgtttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gattcttcactgttctcaatggccaactagatagttgtatttaagtaaatacatgtttga 760

                                                                       
Query: 125 gaataaatgcaggcattttagaaaataagaataataaacttggaattgttagaagtatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaataaatgcaggcattttagaaaataagaataataaacttggaattgttagaagtatag 700

                                                                       
Query: 185 aatatattttccaaattttttgtttggctctgctaagcctttggatttcatgtatacctt 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 699 aatatattttccaaattttttgtttggctctggtaagcctttggatttcatgtatacctt 640

                                                                       
Query: 245 accttgaaagtgctgtttatcaagtcatccaaagaaagtttgttttagggcacctaaagc 304
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 639 gccttgaaagtgctgtttatcaagtcatcaaaagaaagtttgttttagggcacctaaagc 580

                                                                       
Query: 305 actatctacagaacttaaatccttatatgtatgacaccagatgatttgtacatcacctat 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 579 actatctacagaacttaaatccttatatgtatgacaccagataatttgtacatcacctat 520

                                                                       
Query: 365 gcccaacttctagtgtcacaaggcatttcagagtttcttaaactgcccatcgcatgtatg 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 519 gcccaacttctagtgtcacaaggcatttcagagtttcttaaactgcccatcgcatgaatg 460

                                                                       
Query: 425 gactgttgaaacattagctgcctaggatttttaacaaggtaataaagactctaacagatt 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 459 gactgttgaaacattagctgcctaggatttttaacaaggtaataaagactgtaacagatt 400

                                                                       
Query: 485 tagtgcaaatataagtaattttcctgaacattcttgatgcatggttagtgagcatcttag 544
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 399 tagtgcaaatataagtaattttcctgaacatacttgatgcatggttagtgagcatcttag 340

                                                                       
Query: 545 agactgaggaccatcatgaagagaagccatcaggaggtttctttgaatgctgacaatgaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agactgaggaccatcatgaagagaagccatcaggaggtttctttgaatgctgacaatgaa 280

                                                                       
Query: 605 acaaagatgcacacaatataattgttcttggcggaggaacacaaatgaagtanatggaat 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 279 acaaagatgcacacaatataattgttcttggcggaggaacacaaatgaagtaaatggaat 220

                          
Query: 665 gaaatacagtaataa 679
           |||||||||||||||
Sbjct: 219 gaaatacagtaataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)