BAC Information

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BAC

Clone NameMSMg01-424B24
Chromosome4 (Build37)
Map Location 25,234,718 - 25,359,822
singlet/doubletdoublet
Overlap genePrdx6-rs2, LOC665019
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik
Downstream geneLOC625732, Fut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424B24.T7 (MSMg01no424_b24.b1)MSMg01-424B24.TJ (MSMg01no424_b24.g1)
ACCAG518119AG518120
length741761
length of high quality
(start - end)		493 (66 - 558)479 (76 - 554)
definitionCHROMAT_FILE: MSMg01no424_b24.b1 PHD_FILE: MSMg01no424_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:59 2005CHROMAT_FILE: MSMg01no424_b24.g1 PHD_FILE: MSMg01no424_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:59 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(25,359,330 - 25,359,822)(25,234,718 - 25,235,196)
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGACCATGTCTGGAAGCCCCCATGTATCTTGCCCTTAGGTCAT
TCTGCTATAGCTTAGACTTTGCCCTTTCCCCTCTCTCATTTGCGGCCTGC
TGGTCCAGCTGGTTTGCCTGTAGTACAAGTTTGGCTCTGCCCCTCCCTGC
CACAGACCCTGCTTGATGCCTTCCCCACCTCCGAGTCCATCTCGCCCTAG
CAGGGCTCAGCTCCCTCAGCCTTCTTGCGCTCCACCAGTCCAGGCCTCCC
TACACTACTTTGGGCCCTTCCTTTTCCACACCCATCGTGGACTTGGCACT
GGACTTCCACTTCCGGCTGCTGGTAGGAAGTCCCGCCCCCCAGCCACTGC
TGGGCCCAAACCAACCACTCAGTTCCACATTTTCTGCTACCAGGCTGCAG
AAGCTCACAAACACACAACAGCATATTGATTGGTAAGAAGTTTGTCCGTT
TAGCAGGAGGGAACCTAGATGCCCTAGAGGCCCTGGCCAGCCTCTTCTGG
GCCAAGGTGTTGACTTTCAAAGTCCCGGTTCCTAAGACCGGCCTCCTGGC
TGACCTACAAGTTAGGACATCGGACCTTTGGGTGACTTCTTTTCTGAACG
CAGGTTTCAAAACTTTGGGCTTCTGCCGCCCGCCGAAATTCCAGGGATCA
GGGTGAATTGCTTTCTTGCAATTTCCGGGAAATTGGCCGCT

CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAAAACATGGGGTACTAGAGTTTT
CCCTCACTTTGACAGAGAGGCACACCTGTCCTTGCAGTATAGAAAGCTCA
TCTTTAGAGCAAACGGTGCCTGCTGGGATGGATGGCATAGAGAATCAATT
CTTTACATGCAAAGGCAAACCAGTGTGCAGAGGCTTCGCATGATTTACTT
TTGTCATCGAAACTCCTTTAAAAAGAAAATAGCTGCTCACTGCTGCAGCT
GTGCCTCCTTGTTCTCAGTGTTACCACTGACACCATGCCCGAAGGGTTGC
TTCCTGGGAACGAAGCCCCCAACTCTGAGACCGATACCACCATCATCCGC
ATCTACTTCCATGATTTCCTGGGAGATTCATGGGACATTCTCTTTTCCCA
CCCACGGAACTTTACCCCAGTGTGCACCACAGAACTTGGCAGAGCTGCAA
AGCTATCGCCAGAGTTTGCCAAGAGGAACGTTCAGTTGATTGCTCTTCCT
GTAGACAGTGTTGAGGATCACCTTGCCTGGAGCAAGGACATCAATGCTTA
CAGTGGTACAGCACCCACAGAAAAATTACCATTTCCCATCATCGACGATG
AGGACAGGGACCTTGCTATCCTTTGGGCATGTTGGATCCCGTAGAGAAAG
ATGATAATGACTGCCTGTGACCGCCCGTGTGGTGTTCCGGGTTTTTTGTT
TGGTTCGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_b24.b1 MSMg01no424_b24.b1 CHROMAT_FILE:
MSMg01no424_b24.b1 PHD_FILE: MSMg01no424_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:59 2005
         (493 letters)



>mm_chr4_25359130_25360022
          Length = 893

 Score =  938 bits (485), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaagcccccatgtatcttgcccttaggtcattctgctatagcttagactttgccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tctggaagcccccatgtatcttgcccttaggtcattctgctatagcttagactttgccct 634

                                                                       
Query: 61  ttcccctctctcatttgcggcctgctggtccagctggtttgcctgtagtacaagtttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttcccctctctcatttgcggcctgctggtccagctggtttgcctgtagtacaagtttggc 574

                                                                       
Query: 121 tctgcccctccctgccacagaccctgcttgatgccttccccacctccgagtccatctcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tctgcccctccctgccacagaccctgcttgatgccttccccacctccgagtccatctcgc 514

                                                                       
Query: 181 cctagcagggctcagctccctcagccttcttgcgctccaccagtccaggcctccctacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cctagcagggctcagctccctcagccttcttgcgctccaccagtccaggcctccctacac 454

                                                                       
Query: 241 tactttgggcccttccttttccacacccatcgtggacttggcactggacttccacttccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tactttgggcccttccttttccacacccatcgtggacttggcactggacttccacttccg 394

                                                                       
Query: 301 gctgctggtaggaagtcccgccccccagccactgctgggcccaaaccaaccactcagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gctgctggtaggaagtcccgccccccagccactgctgggcccaaaccaaccactcagttc 334

                                                                       
Query: 361 cacattttctgctaccaggctgcagaagctcacaaacacacaacagcatattgattggta 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 333 cacattttctgctaccaggctgtagaagctcacaaacacacaacagcatattgattggta 274

                                                                       
Query: 421 agaagtttgtccgtttagcaggagggaacctagatgccctagaggccctggccagcctct 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aggagtttgtccgtttagcaggagggaacctagatgccctagaggccctggccagcctct 214

                        
Query: 481 tctgggccaaggt 493
           |||||||||||||
Sbjct: 213 tctgggccaaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_b24.g1 MSMg01no424_b24.g1 CHROMAT_FILE:
MSMg01no424_b24.g1 PHD_FILE: MSMg01no424_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:59 2005
         (479 letters)



>mm_chr4_25234518_25235396
          Length = 879

 Score =  895 bits (463), Expect = 0.0
 Identities = 475/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaaacatggggtactagagttttccctcactttgacagagaggcacacctgtccttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaaacatggggtactagagttttccctcactttgacagagaggcacacctgtccttgc 260

                                                                       
Query: 61  agtatagaaagctcatctttagagcaaacggtgcctgctgggatggatggcatagagaat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatagaaagatcatctttagagcaaacggtgcctgctgggatggatggcatagagaat 320

                                                                       
Query: 121 caattctttacatgcaaaggcaaaccagtgtgcagaggcttcgcatgatttacttttgtc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattctttgcatgcaaaggcaaaccagtgtgcagaggcttcgcatgatttacttttgtc 380

                                                                       
Query: 181 atcgaaactcctttaaaaagaaaatagctgctcactgctgcagctgtgcctccttgttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcgaaactcctttaaaaagaaaatagctgctcactgctgcagctgtgcctccttgttct 440

                                                                       
Query: 241 cagtgttaccactgacaccatgcccgaagggttgcttcctgggaacgaagcccccaactc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcgttaccactgacaccatgcccgaagggttgcttcctgggaacgaagcccccaactc 500

                                                                       
Query: 301 tgagaccgataccaccatcatccgcatctacttccatgatttcctgggagattcatggga 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagaccgataccaccaccatccgcatctacttccatgatttcctgggagattcatggga 560

                                                                       
Query: 361 cattctcttttcccacccacggaactttaccccagtgtgcaccacagaacttggcagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattctcttttcccacccacggaactttaccccagtgtgcaccacagaacttggcagagc 620

                                                                      
Query: 421 tgcaaagctatcgccagagtttgccaagaggaacgttcagttgattgctcttcctgtag 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaaagctatcgccagagtttgccaagaggaacgttcagttgattgctcttcctgtag 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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