BAC Information

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BAC

Clone NameMSMg01-424C19
Chromosome4 (Build37)
Map Location 44,912,765 - 44,913,197
singlet/doubletsinglet
Overlap geneZcchc7
Upstream geneReck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream geneD4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424C19.T7 (MSMg01no424_c19.b1)MSMg01-424C19.TJ (MSMg01no424_c19.g1)
ACCAG518157AG518158
length737890
length of high quality
(start - end)
433 (67 - 499)---
definitionCHROMAT_FILE: MSMg01no424_c19.b1 PHD_FILE: MSMg01no424_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:03 2005CHROMAT_FILE: MSMg01no424_c19.g1 PHD_FILE: MSMg01no424_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTAGTCCTACATGTCAGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGATTATAGATGTTGAGAAAGGAAACTGTTTTACACAATTTCAA
AACAAGGATGGATTCTCCTTCACAGTTTAAATGTGTTAAGGTACATAGCT
TCAATTTAAAATGTAGACTATGTATATGCAATCCCAAACAGTTCAGATAT
TTATTTATTAGTTAAGTGGCTTGTGAACAGTTTTAATGAATGATTAATTC
TTAGCTTGGGATTTCCTCTCTTAAATGAACACATAAATGAGTTTCACTGA
AATGACTGTGAGGACAGAAGCAGGGCTGGGCAGACGGCTTAGTGGGTAAA
CATGCTAGCCGCACCAACCTGAGGACCCAAGTTCAATGCCTAGGCCTATC
TAAAAAGTTAGATGCAACGGCATGTATCTTCAGTCTGATCACTGCTGTGC
TAAGTCATTTTTGTCAACTTGACATATGTTCATCTGGAAAGAGGGGATCT
CAACTGAGAAAATGTCCCCAAGTCAGTTTTAGTCAGTTTTTCTTGCAGCA
ACATAGAATCAAAGTACGGCAATTTCTGTGGTCGACGCAGTGAGGACACA
ACAGATTCCTACAGCTCAAGGATCGGGCCGCCTGTAATATGCCCGGAGGC
AGCATGATAGACTTCCCTCCATACGGTGCAAGGAGCCAAGATACTCCTCA
GAATCGTTCTTCTGACCCCCCCTCAAACATCTAGGCC
AATGCAGGGTGAAGGCTGGAGGGCGGCTGGTTTCAAAAAAGGGGNGAACT
ATAGAAGTATTCCAGAGAATTATGGACTAGAAATTACATCTTGGAAGTCT
TTTGTTAATAGTAGCTAGAAGGTAGAAATTTTAGTCTAACTGTAATATTC
GGCTCTTGACTGAGTCTTCCCCAACTCTCCCTCCTGATGTGTAGTCTCAT
AATTTACAGGCTGACCTCGAGCTCATTATGTGCATAAGGACTACCTTGAA
CTGATCCTCCTGTTTCTGATTCCTGAGTGCCAAGATCATATTGACACGCC
CACAACTCTTGTTTTTTATTGTTTTACATCAACTTAATCCATTGGCTTCT
ATCATGTCTAGGAATGCCATTCTACCCTGTACCACATGCTCTCGTGCCTT
AACATTATGTCGCCTGTTTGTTCAATGTTTCTTGTGTATCATGTAAACAT
ACTTATATCTTATTCCTCTAACCTTTTTTACTTCACTCTTGTCCCACACC
TTACTCATTTCCATCCGCTCCATTTTTTTCCTCTCGTACTTTTCTCTCTT
TCTGCCTATCTCCTTCTAAACTTGCTATATTCCTTTTTTACATGACTTCT
TAGCCCTTTTTTTTTCTCCTCCACGTTACTTTCTGTTTTCCCCTTTTTTT
CCTTTTCTTCGCACTATTTCCTGCCTTCCTGTTCTTCTTCTCCTTTCCCC
CTCTCCTATCATTTTTCCTTAGAAAATTTGTCCATGACAATTATCTCACC
TTCTCATTATTTGCACCCATTTCTCCCACCCTACTTCACTCTCTCACTTC
CAGTTTTTACTGCACCTCTTCGCGCTCTTCCTTCACCTTGCNCATTCACA
CTTTCCCTAGTACTAGTACACACTTCCCTCTACCTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_c19.b1 MSMg01no424_c19.b1 CHROMAT_FILE:
MSMg01no424_c19.b1 PHD_FILE: MSMg01no424_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:03 2005
         (433 letters)



>mm_chr4_44912742_44913574
          Length = 833

 Score =  775 bits (401), Expect = 0.0
 Identities = 425/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgagaaaggaaactgttttacacaatttcaaaacaaggatggattctccttcacagt 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 456 tgttgagaaaggaaactgttttacacaatttcaaaacaaggctggattctccttcaaagt 397

                                                                       
Query: 61  ttaaatgtgttaaggtacatagcttcaatttaaaatgtagactatgtatatgcaatccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaaatgtgttaaggtacatagcttcaatttaaaatgtagactatgtatatgcaatccca 337

                                                                       
Query: 121 aacagttcagatatttatttattagttaagtggcttgtgaacagttttaatgaatgatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aacagttcagatatttatttattagttaagtggcttgtgaacagttttaatgaatgatta 277

                                                                       
Query: 181 attcttagcttgggatttcctctcttaaatgaacacataaatgagtttcactgaaatgac 240
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attcttagcttgggatttattctcttaaatgaacacataaatgagtttcactgaaatgac 217

                                                                       
Query: 241 tgtgaggacagaagcagggctgggcagacggcttagtgggtaaacatgctagccgcacca 300
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 216 tgtgaggacagaagcagggctgggcagacggcttagttggtaaacgtgctagccgcacca 157

                                                                       
Query: 301 acctgaggacccaagttcaatgcctaggcctatctaaaaagttagatgcaacggcatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 156 acctgaggacccaagttcaatgcctaggcctatctaaaaagttagatgcaatggcatgta 97

                                                                       
Query: 361 tcttcagtctgatcactgctgtgctaagtcatttttgtcaacttgacatatgttcatctg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 96  tcttcagtctgatcactgctgtgctaagtcatttttgtcaacttgacatatgctcatctg 37

                        
Query: 421 gaaagaggggatc 433
           |||||||||||||
Sbjct: 36  gaaagaggggatc 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)