BAC Information

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BAC

Clone NameMSMg01-424K04
Chromosome4 (Build37)
Map Location 86,600,477 - 86,600,883
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
Downstream geneSlc24a2, Mllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424K04.T7 (MSMg01no424_k04.b1)MSMg01-424K04.TJ (MSMg01no424_k04.g1)
ACCAG518509AG518510
length767894
length of high quality
(start - end)
448 (42 - 489)---
definitionCHROMAT_FILE: MSMg01no424_k04.b1 PHD_FILE: MSMg01no424_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:38 2005CHROMAT_FILE: MSMg01no424_k04.g1 PHD_FILE: MSMg01no424_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAT
TCAAAATGTTCCTCTTAGTTTACATGCTAAAGGACTAGTTTCCAATGCAG
CGGTGTTTGGAGGACGGACCAGATCAGAAGGTCTGACTTCATTGAGGGAT
TTAGCACATTGATAGTCTTATATTTGATAGCATTATGAGGAGGTAGTGGA
AACGTTACAAGGTAGTATACAGTTGCAGGAAATAGGCCACTGGGGACTCG
GCTTGGGAAAATGTATCTTCTGTTCACCCACACTTCCTCTCCCTCTCCCC
CTCTCCCCCTCTCCCCCTTTCCCCCCCTCCTCCTCTCCCTCCTCCGCCTC
CTCCTCCTCCTTCTTCTTCTCTTTCTCTTCTCTTTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCTCACTCCCCTC
CTATCCTTTTCCCCATTTCTTTTCCCCTCTCTGTCCACCATGAAATGAAT
TTTTTTGCACCCATAGATCTTCCTCTTTTCTTTCCTTCATTTTATAAACA
CTTTCGCACTATTTTCTTTGCCCGGATCACCTTGGTACCTAGAACACATA
TCTCTTTTCTTTCTCTCTTTTATAATAAACTATCCCTATCTCAAGTGGTG
GTTTATGGGGGGAATCTACCCGCTTTAGTTCTCTATATCCTTGTTCTCTG
GATCTCCACCGTACTCA
ACCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCTGCGGAATTTCTCAGAGCTCTGGGGGGTGGGAGGCAGA
GAAGGACAGATAGAGAGGCCTGCCTGTTTTATAGAGGGAGGGGTAGGGGG
AGGGCTTATTTTTTTTCTTTTCTCCTTCCTTTCTTTTTTTTCTTTCTTTT
TTTTTTCTTTTTTTTTTTTCTTTCTTTTTTTTTCTTCTTTTTCTTTTTTC
CTCTTCTCCTCTCTTTTCTCCCTCTTTTCCCCTTTTCTCTTCTTTCCTTT
TCTTCTTCTTTCTTCCTCTTTTTTTTTTTTCTTCTTTTTCTCCCTTCTCT
TTCCTTTCCTGTTTCCTCCCTTTCCCCCTCCTCTTTCCCTCCCCCCCTCT
TCTTTTTCCCCTTTTTCTCCTCTCTCTCTTCTTCTTCTCCTTCCTTTTTT
TTTTTTTTTTCTCCTTTTTTCCTCCTTTTCTTTTTTCTCTCTCCCCTTCC
TCCTTCTTTTTTTCCCCTCTTCTTTTTCTCTTTCCTTTCTTTTTTTCTTT
TTCCTTTTTCCTTCTCCCTCTTTCTTTCTTCTCTTTTCCTCCCCTTCTTC
TCTTTTTTCTCTTTTTCCTTCTTCTTTTCCTCCCTTTCCATCTCCTCTCT
TCTCTTTTCCCTTCTTTTCTTTTTTTTCCCCTTTTTTTTTTTTCTCTCTT
TCTCTCTTTCTTTCTTTTTTTATCTTCCCTTCCCCTCCTTCTTTTCTCTC
TCCTTTCTTCTTTTTTTTTCTTTCTTCTCTTTTTTCTTTTTTTCTTTTTT
TTTTTCTCTGCCTCCTTCCCTTCCTCCTTCTTCTCTTTTTCTTTCTCCTC
CTCCCTCTTTCTTCCCTCTCCTGTCTCTTTTCTCCTCCCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_k04.b1 MSMg01no424_k04.b1 CHROMAT_FILE:
MSMg01no424_k04.b1 PHD_FILE: MSMg01no424_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:38 2005
         (448 letters)



>mm_chr4_86600443_86601290
          Length = 848

 Score =  673 bits (348), Expect = 0.0
 Identities = 398/426 (93%), Gaps = 20/426 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaaaatgttcctcttagtttacatgctaaaggactagtttccaatgcagcggtgt 65
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 441 gaattcaaaatgatcctcttagtttacgtgctaaaggactagtttccaatgcagcagtgt 382

                                                                       
Query: 66  ttggaggacggaccagatcagaaggtctgacttcattgagggatttagcacattgatagt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaggacggaccagatcagaaggtctgacttcattgagggatttagcacattgatagt 322

                                                                       
Query: 126 cttatatttgatagcattatgaggaggtagtggaaacgttacaaggtagtatacagttgc 185
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cttatatttgatagcattatgaggaggtagtggaaatgttacaaggtagtatacagttgc 262

                                                                       
Query: 186 aggaaataggccactggggactcggcttgggaaaatgtatcttctgttcacccacacttc 245
           ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct: 261 aggaaataggccactggggactcagcttggaaaaatgtatcttctgttcacccacactcc 202

                                                                       
Query: 246 ctctccctctccccctctccccctctccccctttccccccctcctcctctccctcctccg 305
           |||||||||||||||||||||||||||||||| ||||||| ||||||||           
Sbjct: 201 ctctccctctccccctctccccctctccccctctcccccc-tcctcctc----------- 154

                                                                       
Query: 306 cctcctcctcctccttcttcttctctttctcttctctt-ttcttcttcttcttcttcttc 364
                  ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 153 -------ctcctccttcttcttctctttctcttctcttcttcttcttcttcttcttcttc 101

                                                                       
Query: 365 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 41

                 
Query: 425 ttcttc 430
           ||||||
Sbjct: 40  ttcttc 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 190
Number of extensions: 65
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)