Query= MSMg01no424_p12.b1 MSMg01no424_p12.b1 CHROMAT_FILE:
MSMg01no424_p12.b1 PHD_FILE: MSMg01no424_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:03 2005
(244 letters)
>mm_chr4_135115942_135116585
Length = 644
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%), Gaps = 2/244 (0%)
Strand = Plus / Plus
Query: 1 tagggtggacaaacacccctacctctgacccctacataaggtttgaatgttcacattcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagggtggacaaacacccctacctctgacccctacataaggtttgaatgttcacattcag 260
Query: 61 ggtccgttgtctcaacaaatccaggcagatttattggtgcgacacccccacccccacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtccgttgtctcaacaaatccaggcagatttattggtgcgacacccccacccccacccc 320
Query: 121 ccacccgtcccgtgctggacagcattgctcgctgtggcaattcagatactcaaacaagta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ccacccgtcccgtgctggacagcattgctcgctgtggcaattcagatactcaaacaggta 380
Query: 181 ggcctcatggatgctctgtgatgaagcaagctgcaatctattagcaatgat-tggcatag 239
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct: 381 ggcctcatggatgctctgtgacgaagcaagctgcaatctattagcaatg-tctggcatag 439
Query: 240 gcac 243
||||
Sbjct: 440 gcac 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no424_p12.g1 MSMg01no424_p12.g1 CHROMAT_FILE:
MSMg01no424_p12.g1 PHD_FILE: MSMg01no424_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:03 2005
(343 letters)
>mm_chr4_135241625_135242367
Length = 743
Score = 629 bits (325), Expect = 0.0
Identities = 337/341 (98%)
Strand = Plus / Minus
Query: 1 ccggcaggcttgttactccccgcctacatcgcggtaaaagcttggaggaggctgtgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 ccggcaggcttgttactccccgcctacatcgcggtaaaagcttggaggaggctgtcctaa 444
Query: 61 gctgcaacgcggtctgtgtcgctactaaccagaaaggacatcgcttcaggctttgttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctgcaacgcggtctgtgtcgctactaaccagaaaggacatcgcttcaggctttgttttc 384
Query: 121 tatcctggagcaggggacacttcattccaccacacaaaccattctaactagccaagtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatcctggagcaggggacacttcattccaccacacaaaccattctaactagccaagtggg 324
Query: 181 aaacgctggttttgtaaacagaatggccgaaaccagaaacctgcgaaaccacggaagggg 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaacgctggttttgtaaacagaagggccgaaaccagaaacctgcgaaaccacggaagggg 264
Query: 241 aagcgttatctttctaaattactctccttataggtagagtcgggacaaggctaggacaac 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagcgggatctttctaaattactctccttataggtagagtcgggacaaggctaggacaac 204
Query: 301 aacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
