BAC Information

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BAC

Clone NameMSMg01-425A08
Chromosome4 (Build37)
Map Location 146,663,192 - 146,663,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneLOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425A08.T7 (MSMg01no425_a08.b1)MSMg01-425A08.TJ (MSMg01no425_a08.g1)
ACCAG518803AG518804
length730750
length of high quality
(start - end)		574 (64 - 637)454 (71 - 524)
definitionCHROMAT_FILE: MSMg01no425_a08.b1 PHD_FILE: MSMg01no425_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:07 2005CHROMAT_FILE: MSMg01no425_a08.g1 PHD_FILE: MSMg01no425_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTT
CACTACTTTCGCCCTAGCCTTTGCATCTGAGAGTGCTCACCCACCAATCC
ACCCACTCCTACCTCATACTACTTGCATGATACATCACTGGGGCATCAAG
TATGGGACCCTCTTTTTTATTTCTTAATGTCATTTGTCTTATACATTCTG
CTTTATTTTCATTCCTCCTGACATCTTCACATTAGGACTGACCATTCAGG
AGATGGTACTAAGGACTTGTTTCAGTAAAACTCCAACACCAATAGCTAAG
CAAAGAACACGCCACTCTTTTACTATATATATAAGCTGCATGTCTTGGGC
AGATATTCCACTACACTATTCTATTCTCCAGCTTTTAGAACCCTTGCTAT
CTGTGGCTTTTCAGGCAATGTGTTCTTCTCCATCTTTCCTCCACCTTTTC
TTCCTCTAACTTCCTCTGCCTCCTTCATCTCCTCGTCTCCCTCTTCTTTT
TCTGTCTTTGCCCTCTCTAAAATCTCCAGCCCCACCTTTCCCTTCTATTG
CCCAATCACAAGCTCTGGCCTTTATTCGACCAGTTAAAATGGAGAGAAGG
CTCACATGAAATTACATGAGTATATAGTCCACTGTTCATTGTGGCAGCCC
CTCTTTTGTAAGTAGAATAAGCATTATATGACAAACCGCACCAGGGAAAT
CCACATTTTGTTCCATCCCTTTTGGTCAAC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGCTCTGCCTGTGCCATGCCTGCCTGGA
TACTGCCATGCTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTGT
AAGGCAGCCCCAATTAAATATTGTCTTTATAAGACTTGCCTTGGTCATGG
TGTCTGTTCACAGCGTAAAACCTTAACTAATACAACAAGTAGGAAGTATC
CTTCCTTATCTTTTTTGATAGCTTTTGGTTGAAAGTTGATTTTATTTGAT
ATTAGAATGGCTACTCCAACTTGTTTCTTGGGGCCATTTGCTTAGAAATT
TGTCTTCCAGCCCTTAACTCTGAGCAAGTATCTGTCTTTGACACTGAGGT
GACTTTCCTGTATGCAGCAAAATATTGGGTCCTGTTTACATACCCAGTCT
GTTATTCTATGTCTTATACTGGGAAGTTGAGTCCAATAATGTTAAGAGAT
ATTAAGGAAAAGTGCTTGTTGCTTCCTGCTGTTTTTTAATGTTGTTTTTG
CGTTTGCGCGGCTATCTTTTTTTGGGCTTGTTTAAACATTTGCTTCCTTC
TTCTTCCAATGTGCAATTTCTCTTTTTTGTTATGAAATTTTTCTTTTCCT
ATTCTCCTTTTCTCTCCTGACTATTTCCCCTATCCATTTTCTCATTTTCT
TTCCCCTTCCTTTATCTCTTTTTTCCTTCTTCCCCTTCCTCCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_a08.b1 MSMg01no425_a08.b1 CHROMAT_FILE:
MSMg01no425_a08.b1 PHD_FILE: MSMg01no425_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:07 2005
         (574 letters)



>mm_chr4_146662992_146663965
          Length = 974

 Score =  996 bits (515), Expect = 0.0
 Identities = 560/575 (97%), Gaps = 1/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagcctttgcatctgagagtgctcacccaccaatccacccactcctacctcatactact 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagcctttgcatctgaaagtgctcacccaccaatccacccactcctacctcatactact 260

                                                                       
Query: 61  tgcatgatacatcactggggcatcaagtatgggaccctcttttttatttcttaatgtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatgatacatcactggggcatcaagtatgggaccctcttttttatttcttaatgtcat 320

                                                                       
Query: 121 ttgtcttatacattctgctttattttcattcctcctgacatcttcacattaggactgacc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttgtcttatacattctgctttattttcattcctcctgatatcttcacattaggactgacc 380

                                                                       
Query: 181 attcaggagatggtactaaggacttgtttcagtaaaactccaacaccaatagctaagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcaggagatggtactaaggacttgtttcagtaaaactccaacaccaatagctaagcaa 440

                                                                       
Query: 241 agaacacgccactcttttactatatatataagctgcatgtcttgggcagatattccacta 300
           ||||||| | ||||  |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacacacaactcagttacaatatatataagctgcatgtcttgggcagatattccacta 500

                                                                       
Query: 301 cactattctattctccagcttttagaacccttgctatctgtggcttttcagg-caatgtg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 501 cactattctattctccagcttttagaacccttgctatctgtggcttttcagggccatgtg 560

                                                                       
Query: 360 ttcttctccatctttcctccaccttttcttcctctaacttcctctgcctccttcatctcc 419
           ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ttcttttccatctttcttccaccttttcttcctctaacttcctctgcctccttcatttcc 620

                                                                       
Query: 420 tcgtctccctcttctttttctgtctttgccctctctaaaatctccagccccacctttccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcgtctccctcttctttttctgtctttgccctctctaaaatctccagccccacctttccc 680

                                                                       
Query: 480 ttctattgcccaatcacaagctctggcctttattcgaccagttaaaatggagagaaggct 539
           |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 681 ttctattgtccaatcacaagctctggcctttattcggccagttaaaatggagagaaggtt 740

                                              
Query: 540 cacatgaaattacatgagtatatagtccactgttc 574
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 cacatgaaattacatgagtatatagtccactgttc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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