Query= MSMg01no425_g07.b1 MSMg01no425_g07.b1 CHROMAT_FILE:
MSMg01no425_g07.b1 PHD_FILE: MSMg01no425_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:36 2005
(245 letters)
>mm_chr4_57942787_57943431
Length = 645
Score = 404 bits (209), Expect = e-117
Identities = 227/233 (97%)
Strand = Plus / Minus
Query: 13 tgcctctgcctcctgagtgctgggattaaaggtgtgcgccaccactgcccggctgagcct 72
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 567 tgcctctgcctcctgagtgctgggattaaaggcatgcgccaccactgcccggctgagcct 508
Query: 73 ttctctcttaaattacttttgttaggttactttgtcatcacagcagaaaagtagctaagg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttctctcttaaattacttttgttaggttactttgtcatcacagcagaaaagtagctaagg 448
Query: 133 cagatctctccagcccagaacttaatgtgctacttaggttagttttattctcacagcaat 192
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 447 cagatctctccagcccagaacttaatgtgctacttaggttagttttaaactcacagcaat 388
Query: 193 tctcctgactcagtcttcctagcactgggcatgatccactatcataactcttt 245
|||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 387 tctcctgactcagtcttcctagcactgggcatgagccaccatcataactcttt 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no425_g07.g1 MSMg01no425_g07.g1 CHROMAT_FILE:
MSMg01no425_g07.g1 PHD_FILE: MSMg01no425_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:36 2005
(442 letters)
>mm_chr4_57711751_57712584
Length = 834
Score = 733 bits (379), Expect = 0.0
Identities = 424/443 (95%), Gaps = 10/443 (2%)
Strand = Plus / Plus
Query: 1 ttagttcttgggggatacttggggtgaaagcaaaatttaaaacatgtgtgcttcttgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagttcttgggggatacttggggtgaaagcaaaatttaaaacatgtgtgcttcttgctt 260
Query: 61 cttgacagtggtacattgtacagactctatatgcactagtgtagactatgaggagccgtg 120
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||
Sbjct: 261 cttgacagtgg--cattgtacagactctgtatgtgctagtgtagactatgaggagccatg 318
Query: 121 ctcagtactgtgcccccagaacagggacacgaacaataactctccccactgacccatttg 180
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 319 ctcagtaatgtgcccccagaacagggacac-aacaatagctctccccactgacccatttg 377
Query: 181 ctctgctcagtgagctgggtcaggggtgcatgaaagaatgactcgctctaagttgcaatt 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 ctctgctcagtgagctggg------gtgcatgaaagaatgactcgctctaagttgcaatt 431
Query: 241 agtgcgttgtattcaaatctgaacattagggtttgattcatacacgctaggtaaattcct 300
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 432 agtgcggtggattcaaatctgaacattagggtttgattcatacacgctaggtaaattcat 491
Query: 301 gtgtaaaataagtctcataatggcatagttgagaaaa-taaaagaattgtgggcttttaa 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 492 gtgtaaaataagtctcataatggcatagttgagaaaaataaaagaattgtgggcttttaa 551
Query: 360 agcagagtgatccttagataggtcaacctgaatattttttgtagcaaaaagtccctcctt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agcagagtgatccttagataggtcaacctgaatattttttgtagcaaaaagtccctcctt 611
Query: 420 attcaaatataagaaaacataaa 442
|||||||||||||||||||||||
Sbjct: 612 attcaaatataagaaaacataaa 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 834
Length adjustment: 9
Effective length of query: 433
Effective length of database: 825
Effective search space: 357225
Effective search space used: 357225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
