XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATGCGCGGAATTCC
AAGTCTATTTCTAAAGTAATTATTTATTACTGAACATCAAAAAAAAAAAA
ACCCAGGATTTATTTCTTGCACCAACAGAAAATAAGCTGCTCAAAGTTAT
AATCCCAGATGAGAACATCTTTTCATAAGTTCCACTGAAGTAGGCAAGAG
GATCAGGGACTAAGAAAGATTATCTCAGAGATAGAATAAGTTACAGTCAA
TTGGCTGACCAGTCACTTACTTCATGAGTATAGTAGAGAGTTCTTCTTAA
TGACTGAGAGGATATGTTTTTTGGTTAAAAGATTTTTAATCCAAATATTG
AAAACCTGAAACATTTTAAAACCTAAAACTTTCTATCAACACAACATTAA
AGGTGGTAAATTCATATATAACATCATGTAATGGGTTATATTCACAACAC
AGTCTGGATTAAAATGTAGTGTACAGTTATTTTAAGGCCATATGAGTATT
GAAAATATGTAATTGAGGAAAATACGTAATAAAAAAATTGCATGTTTGGA
ATAGTGAACATTACCAAGATAGCTTATTGTATTCATGTAAATATTCCTAA
ACTAGCAAGATTTTGCTGAAAGGACCCAGATAGATCTGACTCTTGTGAGA
CTATGCTGGGGCCTAGCACACACAGAAGTAGATGCTCATAGTCAGCTATT
GGATGGATCACAGGNCCCCCATTGGAG

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTAGGCTTTTTGTATGTTTATGGGCATCTCT
TTCTTTATGTTAGGGAAGTTTTCTTCTATAATTTTGTTGAAGATATTTGC
TGGCCCTTTAAGTTGAAAATCTTCATTCTCATCTATACGTATTATCCTTA
GGTCTGGTCTTCTCATTGTGTCCTGAACTTCCTGGATGTTTGAGTTAGGA
TCTTTTTGCATTTTGTATTTTCTTTTATTGTTGTGTCCATGTTCTCTGTG
TAATCTTCTGCACCTTTTATTCTCTCTTCCATCTCTTGCATTCTGTTGGT
GATGCTTGCATCTATGGTTCCTCTTCCCACCCCAACCCCTAGGATTTCTA
TGTCCAGAGTTGTCTCCCTTTGGGTTTTCATTATTGTTTCTACTTACATT
TTTAGATCTTGGATGGTTTTGTTCAAATCTATCACCTATTTGGTTGTGTT
TTCCTGTAATTCTTTGAGGGACTTTTGTGCTTTCTCTTTAAGGACTTCTA
CCTGTTTAGCAGTGTTCTCCTTTATTTCTTTAAGTGAGTTATTAATGCCC
TTCTTAAAAACTCTACCAGCAACTTGAGATATAATTTTAAATCCAATTCT
TGCTTCCTGGGNGTGTTGGGGGTATCCCGGAATCACTGTGGTGGGCAGAT
TGGTATCTGATAATACCTAACGGCTTTTGGTTTGTGTT

Query= MSMg01no425_i12.b1 MSMg01no425_i12.b1 CHROMAT_FILE:
MSMg01no425_i12.b1 PHD_FILE: MSMg01no425_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:46 2005
         (404 letters)



>mm_chr4_49992979_49993782
          Length = 804

 Score =  745 bits (385), Expect = 0.0
 Identities = 399/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaaaagatttttaatccaaatattgaaaacctgaaacattttaaaacctaaaactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttaaaagatttttaatccaaatattgaaaacctgaaacattttaaaacctaaaactttc 260

                                                                       
Query: 61  tatcaacacaacattaaaggtggtaaattcatatataacatcatgtaatgggttatattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcaacacaacattaaaggtggtaaattcatatataacatcatgtaatgggttatattc 320

                                                                       
Query: 121 acaacacagtctggattaaaatgtagtgtacagttattttaaggccatatgagtattgaa 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 acaacacagtctggattaaaatgtagtgtacagttatcttaaggccatatgagtattgaa 380

                                                                       
Query: 181 aatatgtaattgaggaaaatacgtaataaaaaaattgcatgtttggaatagtgaacatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatgtaattgaggaaaatacgtaataaaaaaattgcatgtttggaatagtgaacatta 440

                                                                       
Query: 241 ccaagatagcttattgtattcatgtaaatattcctaaactagcaagattttgctgaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagatagcttattgtattcatgtaaatattcctaaactagcaagattttgctgaaagg 500

                                                                       
Query: 301 acccagatagatctgactcttgtgagactatgctggggcctagcacacacagaagtagat 360
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 501 acccagatagatctgactcttgtgagactatgcaggggcctagcaaacacagaagtagat 560

                                                       
Query: 361 gctcatagtcagctattggatggatcacaggncccccattggag 404
           |||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 561 gctcatagtcagctattggatggatcacagggtccccattggag 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)