Query= MSMg01no425_k13.b1 MSMg01no425_k13.b1 CHROMAT_FILE:
MSMg01no425_k13.b1 PHD_FILE: MSMg01no425_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:56 2005
(552 letters)
>mm_chr4_86714616_86715567
Length = 952
Score = 957 bits (495), Expect = 0.0
Identities = 542/567 (95%), Gaps = 16/567 (2%)
Strand = Plus / Minus
Query: 1 agctacaacttttgaagactatagaacattctggttcaatctccaggctgaccccatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agctacaacttttgaagactatagaacattctggttcaatctccaggctgaccccatgag 627
Query: 61 tgtgacaacatatctagaaagttctctgatgctcctggcagttgcctggctgagtgcatg 120
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 626 tgtggcaacatatctagaaagttctctgatgctcctggcagttgcttggctgagtgcatg 567
Query: 121 gg---------------gccagtgttcacaaaggaaagtatcccatgtcactgaaaacat 165
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaaccactggcatgcagccagtgttcacaaaggaaagtatcccatgtcactgaaaacat 507
Query: 166 ttagaacagatggcttgtaggaccatattttcctgagtcccatctgtgccacacaggtag 225
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttagaacagatggcctgtaggaccatattttcctgagtcccatctgtgccacacaggtag 447
Query: 226 gttgactgggccctacctagctaacatttatctggtttggcctctgggcctgcatcccac 285
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 gttgactgagccctacctagctaacaggcatctggtttggcctctgggcctgcatcccac 387
Query: 286 aatccaactgggtgtgtatccaccttccattgatgtatcacaaagcacccaagacctaga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatccaactgggtgtgtatccaccttccattgatgtatcacaaagcacccaagacctaga 327
Query: 346 gcttgactttatggtgggaattcagctgggaatcggctgggtgattatttgcttcatacc 405
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 gcttgactttatggtgggaattcagctgggaatcggctgggtgattctttgcttcatacc 267
Query: 406 gtgtcaatggggcttattgggtggtacctacctggccagcaaataggttggaaggtccaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 gtgtcaatggggcttattgggtggtacctacctggccagcaaataggttggaaagtccaa 207
Query: 466 gagggttttccttacacataatcttttgaaggaagtctaggttcacctagatctctgcct 525
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gagggttt-ccttacacataatcttttgaaggaagtctaggttcacctagatctctgcct 148
Query: 526 ctccatgttgtctctgggtccttacac 552
|||||||||||||||||||||||||||
Sbjct: 147 ctccatgttgtctctgggtccttacac 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_k13.g1 MSMg01no425_k13.g1 CHROMAT_FILE:
MSMg01no425_k13.g1 PHD_FILE: MSMg01no425_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:56 2005
(450 letters)
>mm_chr4_86506156_86507005
Length = 850
Score = 613 bits (317), Expect = e-180
Identities = 396/457 (86%), Gaps = 55/457 (12%)
Strand = Plus / Plus
Query: 1 cagtattcgggaaattaagaaaggaggatcatgagttcgaagccagcctaatctacatag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cagtatttgggaaattaagaaaggaggatcatgagttcgaagccagcctaatctacatag 301
Query: 61 taagttctagagtagcctgggctaactagtgagatactttctcaaacaaaacaacagtag 120
||||||| ||||||||||||||||||||
Sbjct: 302 taagttccagagtagcctgggctaacta-------------------------------- 329
Query: 121 aatacaggaagagaagttgtaggagaggaaatgggttctagtgtttcagaaagctgtttg 180
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 -------------aagttgtaggagaggaaatgggttctagtgtttcagaaagctgtttg 376
Query: 181 ctttctagcccagtcttggacacacacacacacacacacacacacacacacacacacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctttctagcccagtcttggacacacacacacacacacacacacacacacacacacacaca 436
Query: 241 cacacacactc-------acagagagagagagagagagagagagagagagagagagagag 293
|||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cacacaca---gagagagagagagagagagagagagagagagagagagagagagagagag 493
Query: 294 agagatacagagaatcattttaaacacagaagttcaacttaaaagacagtctctacttct 353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 494 agagatacagagaatcattttaaacacagaagttcaacttaaaagacaatctctacttct 553
Query: 354 tttccctttttcattcatttgtatatttattcattttacatccggatcaaagttcgcttc 413
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 554 tttccctttttcattcatttgtatatttattcattttacatccagatcaaagttcccttc 613
Query: 414 ctctcatcccagtctcaccctccccttctcagagaag 450
|||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctctcatcccagtctcaccctccccttctcagagaag 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
