Query= MSMg01no425_p06.b1 MSMg01no425_p06.b1 CHROMAT_FILE:
MSMg01no425_p06.b1 PHD_FILE: MSMg01no425_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:18 2005
(530 letters)
>mm_chr4_64112255_64113184
Length = 930
Score = 959 bits (496), Expect = 0.0
Identities = 516/523 (98%)
Strand = Plus / Minus
Query: 8 gaattctactaattcatgggttgtccttgtcaggtaaacttctggaccatttgtctgttt 67
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattctactaagggatgggttgtccttgtcaggtaaacttctggaccatttgtctgttt 671
Query: 68 tctcatcccaagcttcctctatctcacctctagggtttgtttcctgccccagaaatggaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tctcatcccaagcttcctctatctcacctctagggtttgtttcctgccccagaaatggaa 611
Query: 128 agttacatagtttccaccttacttgcatcaggcagagtaagtttacaatgcataaatcca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 agttacatagtttccaccttacttgcatcaggcagagtaagtttacaatgcataaatcca 551
Query: 188 atcaaatccctggaaggatccatggctctctgattgagatgtgagccacatctatactaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atcaaatccctggaaggatccatggctctctgattgagatgtgagccacatctatactaa 491
Query: 248 aaggcacaggatagtaaagggtaaagggagagaacagagccaagctccacagacaagctc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaggcacaggatagtaaagggtaaagggagagaacagagccaagctccacagacaagctc 431
Query: 308 tctgggtaaacgtaaccaaatgatttatgcaaacttcagtgtgcttctctaaaacctgga 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 430 tctgggtaaacgtaaccaaatgatttatgcaaacttcagtgtgcttctctaaaaactgga 371
Query: 368 gcagacttgtacctcacaggatggctgagatcattgaatacagactataaatagcacttc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gcagacttgtacctcacaggatggctgagatcattgaatacagactataaatagcacttc 311
Query: 428 tgcttagtgctagcctctgttctgatcacaatttctaatagaatcatctaatanagcatt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 310 tgcttagtgctagcctctgttctgatcacaatttctaatagaatcatctaataaagcatt 251
Query: 488 caatagatgagtgtcacaactgatatatgatataattctgtgc 530
|||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 250 caatagatgagtatcacaactgaaatatgatataattctgtgc 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_p06.g1 MSMg01no425_p06.g1 CHROMAT_FILE:
MSMg01no425_p06.g1 PHD_FILE: MSMg01no425_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:19 2005
(502 letters)
>mm_chr4_63933480_63934379
Length = 900
Score = 920 bits (476), Expect = 0.0
Identities = 495/502 (98%), Gaps = 2/502 (0%)
Strand = Plus / Plus
Query: 1 ttcttcgacttctatatcattttaggtatcaaagaattataaggaggatgctgctgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttcgacttctatatcattttaggtatcaaagaattataaggaggatgctgctgctac 260
Query: 61 tggcagagatggcagtgctgttgaccacacagtgatagaaacagcaactgccctttgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagagatggcagtgctgttgaccacacagtgatagaaacagcaactgccctttgttt 320
Query: 121 cttacaatattccaaatgtgatggcacacagtttgtaaaagcaatgtgaacaagatagat 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cttacaatattccaaatgtgatggcacacagtatgtaaaagcaatgtgaacaagatagat 380
Query: 181 ggatagaatgttatatttcacacaagatagtggtacatgcataaccaaacagaacagtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatagaatgttatatttcacacaagatagtggtacatgcataaccaaacagaacagtac 440
Query: 241 tattccagcagaagaaagtgggtgagctgagcaagtggcgtttgctcagggaagcttgga 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tattccagcagaagaaagtgggtgagctgagcaagtggcatttgctcagggaagcttgga 500
Query: 301 attttttttttgtaagccagaatagagtttgaatttcaggtcaagtgagttggctagagc 360
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttttttt--gtaagccagaatagagtttgaatttcaggtcaagtgagttggctagagc 558
Query: 361 agaagagaaaaactatggataacacatatcttaatgggtccctctacctgccaaatacag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 agaagagaaaaactatggataacacatatcttaatgggtccctctacctgccaaatgcag 618
Query: 421 tatgtattataaggtatataaatgataatacagacatcagttaggctgaaactataatga 480
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 619 tatgtattataaggtatataaatggtaatacggacatcagttaggctgaaactataatga 678
Query: 481 atcataaaaagggctaatggtg 502
||||||||||||||||||||||
Sbjct: 679 atcataaaaagggctaatggtg 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 900
Length adjustment: 10
Effective length of query: 492
Effective length of database: 890
Effective search space: 437880
Effective search space used: 437880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
