BAC Information

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BAC

Clone NameMSMg01-426A19
Chromosome4 (Build37)
Map Location 6,771,108 - 6,849,672
singlet/doubletdoublet
Overlap geneTox
Upstream geneLOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A19.T7 (MSMg01no426_a19.b1)MSMg01-426A19.TJ (MSMg01no426_a19.g1)
ACCAG519585AG519586
length781763
length of high quality
(start - end)
434 (46 - 479)529 (73 - 601)
definitionCHROMAT_FILE: MSMg01no426_a19.b1 PHD_FILE: MSMg01no426_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:26 2005CHROMAT_FILE: MSMg01no426_a19.g1 PHD_FILE: MSMg01no426_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,771,108 - 6,771,534)(6,849,188 - 6,849,672)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAGCATGTCCTGCTGTGGGGTGGACTGGTTTGTTTGCAAATGT
TTTTAATGTTCAGATGCCAAAGAACCACTAGAATATGGACACTTTTTTTC
TTTTTTTAAACGCTAACAAACTAAACGGAGCAGAAGTAGTGGAGTGAATC
AGATGTTCTGCGGTCCATGCATATTCTCCAATGTGTTACTTTCTATTTCA
TCTACTCAAACTCAGTTTTTAAATTTAGCACCACTCTCAAGCCAACTAAG
GCTCTGAAGTTTTGGTTTTTGTCTATCCAAACTGTAGGCTAATTGAATAT
GCTCATGTTACTGCTCTGGCTGGACACTTTCACTCAAACTGTACCAAAGT
TCAGTGATTTTGAGCCAAGGCTGACATGGCATTTCAAAATAAAACGTATG
CAGTTACAGACATTCTAACTTTTTTAGTGTATTCCATGTCCCCTCTACCT
ATGCATGTGTCTACTGGATGCATTAACTAATTTCACTTTTGTGTCTATTC
CGAGGTAAGCCACCATTACTAGTACTTGAACAGTGTAAACCAGCCTATGA
AGAGACAGAGAACCTTAACTAAAACCTGAGTTACCGTTCCTACCCAGCCT
GTGGGGAAGTTTCCCCAGCTGAAGGGGAAAAAATTCCCCCCCAGGGCTGG
GATGGGTTCTCCCCCAAAAGGAAGTATATAAAATTTTGGAAAACGTTCCT
GAAAAAGGGACAATTCAATTAAAGGGGCCAC
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTTTCAAGTAACTGACATTCTCTGTG
AATTCTCATTAAGAAAAAACATCAAAATCGTTGCACTTTCGTAGGCTTAG
TGTTTTCTCCTTTTCCTTTTTATCTTTTTGATTTTTATATTACTGCGGGT
GAATCTATGCCAGAGAACAAAATAAAATGCTAATTACAACACCCTGATTC
AATAAACAATAGTGGCCTCTTCTTTGAGAACATGGTCTTTTAAAAATTGT
ATTTAAATTAATTTTCTCTTTCTGAGAGCCAGGGGAAATACATACAGACT
TCATAAACTTTGCTGAATATTTTTTGTGAAGAAAAAGAAACTGGACTATT
GGAAAAGGGCAAGAAAATATATCTCATTTTAGAAAAGGGGAAGGCATAAA
CAGGGTTGAAATCTTCATTTCTCCAGCCTAAGCTTGCCTCATTGAGTAAG
GCACATTGGCACTAATGGATAATAAGCAACCCAAAGCCAACCGTGGTGAG
GAGAGGGGAGTCTTGCGACAATGGCGTTTCCCACTACATGAACAGTCTGT
GATTCATTAGGAGACTATTTTGGAAATATTTGATAATCATTCCTTTCTGT
CATAACAGGCACAGGAACAATCCAATTGCTGCAAATTCATATCCCATCAT
TTTGATCAGGTTGGCTGCGCTTGACACGGTTTGCTTAATCAAGTTTGCTC
GCCCGTTTAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a19.b1 MSMg01no426_a19.b1 CHROMAT_FILE:
MSMg01no426_a19.b1 PHD_FILE: MSMg01no426_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:26 2005
         (434 letters)



>mm_chr4_6770905_6771737
          Length = 833

 Score =  735 bits (380), Expect = 0.0
 Identities = 416/428 (97%), Gaps = 1/428 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccagcatgtcctgctgtggggtggactggtttgtttgcaaatgtttttaatg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccagcatggcctgctgtggggtggactggtttgtttgcaaatgtttttaatg 263

                                                                       
Query: 64  ttcagatgccaaagaaccactagaatatggacactttttttctttttttaaacgctaaca 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 ttcagatgccaaagaaccactagaatatggacactttttt-ctttttttaaacgctaaca 322

                                                                       
Query: 124 aactaaacggagcagaagtagtggagtgaatcagatgttctgcggtccatgcatattctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aactaaacggagcagaagtagtggagtgaatcagatgttctgcggtccatgcatattctc 382

                                                                       
Query: 184 caatgtgttactttctatttcatctactcaaactcagtttttaaatttagcaccactctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caatgtgttactttctatttcatctactcaaactcagtttttaaatttagcaccactctc 442

                                                                       
Query: 244 aagccaactaaggctctgaagttttggtttttgtctatccaaactgtaggctaattgaat 303
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 aagccaactaaggctttgaagttttggttttggtctatccaaactgtaggctaattgaat 502

                                                                       
Query: 304 atgctcatgttactgctctggctggacactttcactcaaactgtaccaaagttcagtgat 363
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 503 ctgctcatgttactgctctggctggacactttccctcaaactgtaccaaagttcagtgac 562

                                                                       
Query: 364 tttgagccaaggctgacatggcatttcaaaataaaacgtatgcagttacagacattctaa 423
           |||||||||||||||| ||||| |||||||||||||| ||||||||||||||| || |||
Sbjct: 563 tttgagccaaggctgaaatggcctttcaaaataaaacatatgcagttacagacgttgtaa 622

                   
Query: 424 ctttttta 431
           ||||||||
Sbjct: 623 ctttttta 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space:   350200
Effective search space used:   350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no426_a19.g1 MSMg01no426_a19.g1 CHROMAT_FILE:
MSMg01no426_a19.g1 PHD_FILE: MSMg01no426_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:26 2005
         (529 letters)



>mm_chr4_6848745_6849673
          Length = 929

 Score =  884 bits (457), Expect = 0.0
 Identities = 478/485 (98%)
 Strand = Plus / Minus

                                                                       
Query: 43  aaaaacatcaaaatcgttgcactttcgtaggcttagtgttttctccttttcctttttatc 102
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 928 aaaaacatcaaaatcgttgcacttttgtgggcttagtgttttctccttttcctttttatc 869

                                                                       
Query: 103 tttttgatttttatattactgcgggtgaatctatgccagagaacaaaataaaatgctaat 162
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 868 tttttgatttttatattactgcaggtgaatctatgccagagaacaaaataaaatgctaat 809

                                                                       
Query: 163 tacaacaccctgattcaataaacaatagtggcctcttctttgagaacatggtcttttaaa 222
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 808 tacaacaccctgattcaataaacaatagtggcctcttctttgagaacacggtcttttaaa 749

                                                                       
Query: 223 aattgtatttaaattaattttctctttctgagagccaggggaaatacatacagacttcat 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aattgtatttaaattaattttctctttctgagagccaggggaaatacatacagacttcat 689

                                                                       
Query: 283 aaactttgctgaatattttttgtgaagaaaaagaaactggactattggaaaagggcaaga 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaactttgctgaatattttttgtgaagaaaaagaaactggactattggaaaagggcaaga 629

                                                                       
Query: 343 aaatatatctcattttagaaaaggggaaggcataaacagggttgaaatcttcatttctcc 402
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 628 aaatatatctcgttttagaaaaggggaaggtataaacagggttgaaatcttcatttctcc 569

                                                                       
Query: 403 agcctaagcttgcctcattgagtaaggcacattggcactaatggataataagcaacccaa 462
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agtctaagcttgcctcattgagtaaggcacattggcactaatggataataagcaacccaa 509

                                                                       
Query: 463 agccaaccgtggtgaggagaggggagtcttgcgacaatggcgtttcccactacatgaaca 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agccaaccgtggtgaggagaggggagtcttgcgacaatggcgtttcccactacatgaaca 449

                
Query: 523 gtctg 527
           |||||
Sbjct: 448 gtctg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)