BAC Information

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BAC

Clone NameMSMg01-426A20
Chromosome4 (Build37)
Map Location 77,511,169 - 77,600,971
singlet/doubletdoublet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A20.T7 (MSMg01no426_a20.b1)MSMg01-426A20.TJ (MSMg01no426_a20.g1)
ACCAG519587AG519588
length780779
length of high quality
(start - end)		479 (44 - 522)438 (81 - 518)
definitionCHROMAT_FILE: MSMg01no426_a20.b1 PHD_FILE: MSMg01no426_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:26 2005CHROMAT_FILE: MSMg01no426_a20.g1 PHD_FILE: MSMg01no426_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,600,496 - 77,600,971)(77,511,169 - 77,511,606)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGTCTGTTGTCTGGATTTATTGTACGAATGCATCGAACTGGAAAT
AAAATGCCTATGTTTTCAACTTGAGTAAGTAACAGCAATAAATAGACTAT
ATTTTTACAATACCATTTTTCTGAAGAAAAGTCTAGTAATATGATTTAAT
AAATCTGAAAAAGAACATTGAGCAATGGCACACAGGACTGCTATTTGGCA
AAAGAGAGAGTATAAATGCTCAACTGCAACATTCAAATCAACAAATGCAC
ATCCCCCTGCAGTTCAGCAAATCATTCCAATTGCCCATAACACTTTCAAT
TTGGAGGTTCTATGGAGGTTATAATTATATCTTAACTTTTAAAACCATAT
CATTATCCATTCAGTTAATGGTATACTGCTTTGATAAAGATCATAATATC
CCCAAGTGTACACTGAAATTGTTAAGCACAATAATTTATGCTAATTATGT
ATAGAGTTAATATATTTAAGTATGTTTTATTACACTGTAGAACTTAGNTT
GCTGCAGCACATGCAATTATTTTTTATTATGNAAACACATATTTTAAGAT
TTATTTTCACCTATTACAGGGCTAGTAAAAATTGCTTCATTGCTTACTTC
GGGCCTCTCAAAACAGAGAAAACAGGATTATCCCCCAATACCCCCCCTTA
TTGGAAAATTTATGCAGGGTTGAGGGGTAAGGACCCTGTTTTTTTTAAAA
TATCAAAGGGGAAATTGGGCGCCCAAATTC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAACAGATACATGTCCTGA
ATACACAATGTACTACTTTCCTCCATTCCTTTGATGCCCTTAAGACTCAC
CTCTGGGGATAGCACAAGAAGAGAATGTCTAATTTTCTCATTAAAGAGAA
CATAGGTGAAAATGATAATGGATTCTCAACTAAGTATGCATAGCATTTCA
GTACAGCAAGGGAAAGTCATTAAAATTACTGTAAAATATTCATTTGAGCA
ACCAACTTTTAGACATATTCATGGCATTGCCCTCTAGGTACTTCTGTGAT
CTACTATAAAACACTGAATAAGAGAAAGGATGTAATGTAAGTCTATAAAA
TCACTCTTTTAATATCACACATTGGCCTAATTGAATAAAAGGTACATGTA
TGGCAACTGGCATATGCCAGGAGAGTAAAGTATCCTTATGGTGTATAGAA
TATTACTTCTCTGTTAAGAGCANGAAAGCATGCAGGGGAAAAGTAAAATG
TTTTAATCCTTAGAAACCACCAGTCAATCTTTAACTGTGTGAAGGAAATA
TACTTATGGGGGTGATTTTTCTAAAATAAAACTATCCAAAATAGTTTTAC
CTATAAAATATCTGCTGGGAATATTTAAATAACCCACGGGGATTTGGTAA
AGGTTATCAAAATTTTTTCTTCCGAAAATACTTGTCTTGGAGTCCCCCCG
TTTGTATAACGTTTTTAGGTCTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a20.b1 MSMg01no426_a20.b1 CHROMAT_FILE:
MSMg01no426_a20.b1 PHD_FILE: MSMg01no426_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:26 2005
         (479 letters)



>mm_chr4_77600293_77601171
          Length = 879

 Score =  859 bits (444), Expect = 0.0
 Identities = 468/476 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgtctgttgtctggatttattgtacgaatgcatcgaactggaaataaaatg 63
           |||||||||||||||||||||||||||| | ||||||||||| |||  ||||||||||||
Sbjct: 679 ggaattcagtgtctgttgtctggatttagtatacgaatgcatagaagaggaaataaaatg 620

                                                                       
Query: 64  cctatgttttcaacttgagtaagtaacagcaataaatagactatatttttacaataccat 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 cctatgttttcaacttgagtaagtaacaacaataaatagactatatttttacaataccat 560

                                                                       
Query: 124 ttttctgaagaaaagtctagtaatatgatttaataaatctgaaaaagaacattgagcaat 183
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 559 ttttctgaagaaaagtctagcaatatgaattaataaatctgaaaaagaacattgagcaat 500

                                                                       
Query: 184 ggcacacaggactgctatttggcaaaagagagagtataaatgctcaactgcaacattcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggcacacaggactgctatttggcaaaagagagagtataaatgctcaactgcaacattcaa 440

                                                                       
Query: 244 atcaacaaatgcacatccccctgcagttcagcaaatcattccaattgcccataacacttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcaacaaatgcacatccccctgcagttcagcaaatcattccaattgcccataacacttt 380

                                                                       
Query: 304 caatttggaggttctatggaggttataattatatcttaacttttaaaaccatatcattat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caatttggaggttctatggaggttataattatatcttaacttttaaaaccatatcattat 320

                                                                       
Query: 364 ccattcagttaatggtatactgctttgataaagatcataatatccccaagtgtacactga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccattcagttaatggtatactgctttgataaagatcataatatccccaagtgtacactga 260

                                                                   
Query: 424 aattgttaagcacaataatttatgctaattatgtatagagttaatatatttaagta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aattgttaagcacaataatttatgctaattatgtatagagttaatatatttaagta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_a20.g1 MSMg01no426_a20.g1 CHROMAT_FILE:
MSMg01no426_a20.g1 PHD_FILE: MSMg01no426_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:26 2005
         (438 letters)



>mm_chr4_77510969_77511806
          Length = 838

 Score =  847 bits (438), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacagatacatgtcctgaatacacaatgtactactttcctccattcctttgatgccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacagatacatgtcctgaatacacaatgtactactttcctccattcctttgatgccct 260

                                                                       
Query: 61  taagactcacctctggggatagcacaagaagagaatgtctaattttctcattaaagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagactcacctctggggatagcacaagaagagaatgtctaattttctcattaaagagaa 320

                                                                       
Query: 121 cataggtgaaaatgataatggattctcaactaagtatgcatagcatttcagtacagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataggtgaaaatgataatggattctcaactaagtatgcatagcatttcagtacagcaag 380

                                                                       
Query: 181 ggaaagtcattaaaattactgtaaaatattcatttgagcaaccaacttttagacatattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaagtcattaaaattactgtaaaatattcatttgagcaaccaacttttagacatattc 440

                                                                       
Query: 241 atggcattgccctctaggtacttctgtgatctactataaaacactgaataagagaaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggcattgccctctaggtacttctgtgatctactataaaacactgaataagagaaagga 500

                                                                       
Query: 301 tgtaatgtaagtctataaaatcactcttttaatatcacacattggcctaattgaataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaatgtaagtctataaaatcactcttttaatatcacacattggcctaattgaataaaa 560

                                                                       
Query: 361 ggtacatgtatggcaactggcatatgccaggagagtaaagtatccttatggtgtatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtacatgtatggcaactggcatatgccaggagagtaaagtatccttatggtgtatagaa 620

                             
Query: 421 tattacttctctgttaag 438
           ||||||||||||||||||
Sbjct: 621 tattacttctctgttaag 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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