BAC Information

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BAC

Clone NameMSMg01-426E19
Chromosome4 (Build37)
Map Location 93,511,792 - 93,512,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426E19.T7 (MSMg01no426_e19.b1)MSMg01-426E19.TJ (MSMg01no426_e19.g1)
ACCAG519774AG519775
length771797
length of high quality
(start - end)		424 (44 - 467)440 (72 - 511)
definitionCHROMAT_FILE: MSMg01no426_e19.b1 PHD_FILE: MSMg01no426_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:47 2005CHROMAT_FILE: MSMg01no426_e19.g1 PHD_FILE: MSMg01no426_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTCACTGTCCTGGGTTTTTTGTTATTCCAGTTGAATTTAAGAATT
AATTTTTCTAGCTCGAGGTTTGTTGTGAGAAGATCAATTTCTTGCTTTTT
CTTGGGTGTAGTTTCCCTCCTTGTATTTGAGTTTTCCTTCTGTTATCCTC
TGTACAGCTGGTTCAGTGGAAAGATATTGTTTAAATTTTGTCATGGAATA
CCTTGGTTCCTCCATCTATGGTAATTTAGAGTTTAACTGAGTAGAGTAGC
CTGGGTCAGCATTTGTGACATGTGTCCAAGATCTTCTGGCTTTTAGAGAC
TGTTGAGGAGTCTGTTGTAGTTCTGAAATGTCTGCCTTGTAGTTCTTGAA
ATATCTGCTTCTTGACCTTTTTCCCTTACTGCTTTTAATATTCTTTCTTT
GTTCTGTGCATTTGATGTTTTAATTATAATGTGACAGGAGGATTTTCTTT
TCTGGTAAAATCTATTTGGTGGTTTGTAGGCTTCTTTTATGTTTACGAGC
TTCTCTTTCTTTANGTAAAGAAAATTTCCTTATGAATTGTTGAAAAGGTT
ACTGACTCTTTGATTGAAAACCTCCCTCTCTTCTAAACCATTTTTCTAAA
TTGGGCTTTTTCTTGTGGCTGGAGGCAGGAGTGTTTGATAAAAAGTTTTT
ACCTTTGGGTTCCTTTAGGGGGGCCGGGGCTCCTGGTCTCCCCCCCTAAA
ACCTATGTTTTTGGGGGGGGG

AGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAGCTTGCAACTCAGTATGAAGTTTGTG
ACTCAGGAGAAGTCACTTTACTTCCTAGCTCTCTTCAATTAAAAACACAA
CCTGGGGAAAGACTCTTGGACTGAAAAACAAAAACAAAAAAAAGAATAAC
AAACCCTTTATATATATATATACACACACATATATATGTATATATATATA
CGTATATATATATGCATATATGTACACACATGTACATATGTGTGTGTCTG
TATATATACACACACACACATATATATACATATATGTATACACACACATA
TATATATATATTTTTTTTTTTCATGAAGCAGAGCAGATCATGGGTTCTGT
GTTCAGGTGAGGATCATCCTGTGCTGTTTAGCTGTAGGTGTAGAATCACA
TCTAGTCTCTTTTCTAGGTGATGGGCTAATGAATAATAGTAATCTGACAG
CTTTAAATCTTTGAACCTAGGTTATTGCTGCTTTTCTCCTCCTCTTTCTC
CTCTTCCTCCTCCTCCTTCTAAGACTGTCTTTATAAAACTCATTCTTTTT
TCAATCATTTAAAAGTCCCCGGAGGGAGGGAATGGAAAAAAAATGGATGC
GCACCTACCGCAGGTAAGGGAAAGGACCTTTTTTTCTGGGGGAAAAGGGT
AAAAAACAGGGAGAAAAATGTGGATGCCTTCCTTCCTTGTACAAAACAAG
GATTTAATAAAAAAAGGGGGCCGGCTTCTTATAGTGGTTTTTCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_e19.g1 MSMg01no426_e19.g1 CHROMAT_FILE:
MSMg01no426_e19.g1 PHD_FILE: MSMg01no426_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:47 2005
         (440 letters)



>mm_chr4_93511298_93512137
          Length = 840

 Score =  397 bits (205), Expect = e-114
 Identities = 298/353 (84%), Gaps = 41/353 (11%)
 Strand = Plus / Minus

                                                                       
Query: 122 agaataacaaaccctttatatatatatatacacacacatatatatgtatatatatatacg 181
           |||||||||||||||||||||||||||||| | | | |||||||| ||||||||||||  
Sbjct: 840 agaataacaaaccctttatatatatatatatatatatatatatatatatatatatata-- 783

                                                                       
Query: 182 ta--------tatatatatgcatatatgtacacacatgtacatatgtgtgtgtctgtata 233
           ||        ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 782 tatatatatgtatatatatgcatatatatacacacatgtacatgtgtgtgtgtctgtata 723

                                                                       
Query: 234 tatacacacacacac------------------------atatatatacatatatgtat- 268
           |||||||||||||||                        |||||||||||||||||||| 
Sbjct: 722 tatacacacacacacatatatatatatatatatatatatatatatatacatatatgtata 663

                                                                       
Query: 269 -acacacacatatatatatatatttttttttttcatgaagcagagcagatcatgggttct 327
            ||||||||| | | | |||||     |||||||||||||||||||||||||||||||||
Sbjct: 662 cacacacacacacacacatata-----ttttttcatgaagcagagcagatcatgggttct 608

                                                                       
Query: 328 gtgttcaggtgaggatcatcctgtgctgtttagctgtaggtgtagaatcacatctagtct 387
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 607 gtgttcaagtgaggattatcctgtgctgtttagctgtaggtgtagaatcacatatagtct 548

                                                                
Query: 388 cttttctaggtgatgggctaatgaataatagtaatctgacagctttaaatctt 440
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cttttctaggtgatgggctaatgaataatagtaatctgacagctttaaatctt 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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