TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTACACCCCTTACCCCATAAAAACCCCTAGCTTTTGAG
TCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCATGTCGGTCCGG
AGCTCTGTATTTAAACGACCTCATGTTATTACATCAAGATGGTCCTTTGT
GATTTTTTGGGTGCACGCTGAATCGGGAATGGAATGGGGGTTTCCCCACT
AGGTTCTAACACAACCACTGAGGCTATTAAAGTCTTGTCTATTTGTCATC
CTTGGTCCACATAACACCTGCCATCGCATGGGTAGCTATGGTGTTCTATT
ATGCTTTCATGATTGTTAAAACCCTTACAGCAGTCCTCCAAAGTCTATAC
GATTCCCAGTTTATAGAAGAGATCAGTATATAACTTATACATAAGGTATG
AACGGAATTGAAATCAAAAGTCTTGTGATCCAATGTTTAAAATGCTCTTG
CTTTTTACTCTGGCGTGCCTCCCATGGGAACGTGATGTTAGCTTGGGAAC
ANCCCGATTTTTATTGGCTTTGGGTTTGCCCCTCCCCCGGTCCGATTCCA
ATATAAACTGAATGGCTTGGGGAGGTTTTTTCTTTACCCCCCCTCCCTCC
CCCACAAAAAAATCTTTATTTTTTATTTTTGAAAATACTATATTTTAATC
TCCTTAATAAACTTTATTTGCCTCCTAAACGTGTTAACAATAATAATTCC
CCCTCCTGTGTATAAACCACCTTTCTTAACACATATCACTCCTCTCCCT

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATTCAAACATTCTGAGCAGGGAGTAAGTAACCTGAGGAA
TAGAGATGTTTGGAAGGCCTCACTCTGTGTTAGTTATGGAAGGACTTGGC
TTAAGTCACTCTTTTTAAATCCTCCACAGAATCTAGAACAGTACTTTAAA
AGGACATGTGGAAGTCAGTAATGAATTCTGTGAGATTGAAGTCAATGACA
GGCACTTTGTGGAGAGCAATGAATGACTGGGTTGTGTGCAAGCACAATTC
AGAGCTGTCAAACTTGAAAGCGTATTTATTGGGCTATTGTAAAGTTGAGA
CTAGCCTTGTGATCCCCACTCTTCCCTTTTGAAGGCTGGCGGTTGCCATG
GTTACAGCTATATGGCTAGGCTTATTTATAGCTATACACTATCTTTATCG
AACTCCACATCAGATGAGAGAATAATTCCTCTGTGAAGGTATCTAATAGC
ATTGTAAATATTATTTATGATTCTTAGGTATATACATTTCCCTGAAAATT
TCCAATCATCTCGGTATAACTCCATATATAACACTTTTCTTGTGAATAAA
TGTTCTTGTAAATAATTTCAAATTTTCTTGCCTTCTTTAATTTGGTTCAT
CCTTCCGAATTTTGTTTGTGCCAAGTTATTCCTATTGCTTCTCTTTTCTT
TCTGTTACTTTTTTGGGTTTTATACATTTAGATGAAAAACTTTCCTTCTC
TCCCCACCCTTTTTTCTTTCTCCTCATTATTCCCTTTTTTGTCTT

Query= MSMg01no426_e24.b1 MSMg01no426_e24.b1 CHROMAT_FILE:
MSMg01no426_e24.b1 PHD_FILE: MSMg01no426_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:48 2005
         (441 letters)



>mm_chr4_48790100_48790940
          Length = 841

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacacccctacaccccttaccccataaaaacccctagcttttgagtctcgtggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacacccctacaccccttaccccataaaaacccctagcttttgagtctcgtggc 264

                                                                       
Query: 65  cgacatccgttatctcctgtgtgggatgcatgtcggtccggagctctgtatttaaacgac 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgatatccgttatctcctgtgtgggatgcatgtcggtccggagctctgtatttaaacgac 324

                                                                       
Query: 125 ctcatgttattacatcaagatggtcctttgtgattttttgggtgcacgctgaatcgggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcatgttattacatcaagatggtcctttgtgattttttgggtgcacgctgaatcgggaa 384

                                                                       
Query: 185 tggaatgggggtttccccactaggttctaacacaaccactgaggctattaaagtcttgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggaatgggggtttccccactaggttctaacacaaccactgaggctattaaagtcttgtc 444

                                                                       
Query: 245 tatttgtcatccttggtccacataacacctgccatcgcatgggtagctatggtgttctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatttgtcatccttggtccacataacacctgccatcgcatgggtagctatggtgttctat 504

                                                                       
Query: 305 tatgctttcatgattgttaaaacccttacagcagtcctccaaagtctatacgattcccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgctttcatgattgttaaaacccttacagcagtcctccaaagtctatacgattcccag 564

                                                                       
Query: 365 tttatagaagagatcagtatataacttatacataaggtatgaacggaattgaaatcaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttatagaagagatcagtatataacttatacataaggtatgaacggaattgaaatcaaaa 624

                            
Query: 425 gtcttgtgatccaatgt 441
           |||||||||||||||||
Sbjct: 625 gtcttgtgatccaatgt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_e24.g1 MSMg01no426_e24.g1 CHROMAT_FILE:
MSMg01no426_e24.g1 PHD_FILE: MSMg01no426_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:48 2005
         (314 letters)



>mm_chr4_48937390_48938103
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcagggagtaagtaacctgaggaatagagatgtttggaaggcctcactctgtgttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gagcagggagtaagtaacctgaggaatagagatgtttggaaggcctcactctgtgttagt 455

                                                                       
Query: 61  tatggaaggacttggcttaagtcactctttttaaatcctccacagaatctagaacagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatggaaggacttggcttaagtcactctttttaaatcctccacagaatctagaacagtac 395

                                                                       
Query: 121 tttaaaaggacatgtggaagtcagtaatgaattctgtgagattgaagtcaatgacaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttaaaaggacatgtggaagtcagtaatgaattctgtgagattgaagtcaatgacaggca 335

                                                                       
Query: 181 ctttgtggagagcaatgaatgactgggttgtgtgcaagcacaattcagagctgtcaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctttgtggagagcaatgaatgactgggttgtgtgcaagcacaattcagagctgtcaaact 275

                                                                       
Query: 241 tgaaagcgtatttattgggctattgtaaagttgagactagccttgtgatccccactcttc 300
           |||||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 tgaaagcggacatattgggctattgtaaagttgagactagccttgtgagccccactcttc 215

                         
Query: 301 ccttttgaaggctg 314
           ||||||||||||||
Sbjct: 214 ccttttgaaggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)