BAC Information

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BAC

Clone NameMSMg01-426F17
Chromosome4 (Build37)
Map Location 122,723,710 - 122,724,157
singlet/doubletsinglet
Overlap geneTrit1
Upstream geneLOC666937, LOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1
Downstream geneBmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426F17.T7 (MSMg01no426_f17.b1)MSMg01-426F17.TJ (MSMg01no426_f17.g1)
ACCAG519818AG519819
length780781
length of high quality
(start - end)		477 (45 - 521)448 (75 - 522)
definitionCHROMAT_FILE: MSMg01no426_f17.b1 PHD_FILE: MSMg01no426_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:52 2005CHROMAT_FILE: MSMg01no426_f17.g1 PHD_FILE: MSMg01no426_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATCCCTGCAACCCACATAAAGTAGCGTGTATCTGTATTCCCAGA
ACATCAACAATGAGAAGGAAGGTAGAAAGAAGTGAAGTCCTGGAAGCCCA
AAGGCCAGGTAGGTAGTCTGGGTTAAATACAATCATATGCAACAAAGAGA
CCCTGTCTTAAAGAAGACAGAAGGTGAAAACTGACACTCAAGGTCATCTC
TGGCCTCCATACACATGCCATGCCTCATACACACACACACATACACATCA
TACACATACATCATACATACACACAACATACACATTATACAAACACACAC
ACAAACACAGATACACAAATTATACACATACACAGATAAACACACACATA
CATATACAAATTATACACACGTACACACGTCACTCATATACATACACTTA
CACATACAAACATACATCATACACACATCACTCACACACATACAAACATA
CATCATACACACATCGCTCACACACATACAAACATACATCATACACACAT
CACTCACCCATACACACACTTCATACACCCAAACATCACTCTACAATAAA
CATCCTAAACAACCCTAAAAACACGGACACACAAANCAAAAACACCCCTT
CTTGCCCTGGAAAAAAGGCCCCAGGGTTGTTTAAAAAAAAAAGGGTCTTG
CGAAGAACCAAAATAATTTTTTGCTCTTTGGGGACTCCAATTGAGGGGAT
CCCTCCCCCATTTGAACCTTGTGGCGCGGT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGTGAGAGATTCCTGTTTCTTCAA
ACACTTGCAAGCTCCTACGTTGTTTAAAAAAGGGGGTGGAGTGGGGAACC
CATTAGGAATATTCATTCTCAACTAGAATAAAGAGAAAGACTGTCTCGCA
GAAAGCTTCATTTTTCAACTTCATGCATAAATTCCCAAAGCACGAAGCTC
CGGCTTTACTCTAATCCCAGAGCTATTCAGAAAGGCACCTAAACTCTGGG
TGAGAAATAACACTGTTCTTTTAAAAACACATTCTAGAATTAGTTAAAGG
AGTTCAGAAATAACAGGTTTCTTCTGTACAAACAGAAGGAGACTTACTTT
CAAGTGAGCAGTACAAGCTTGTTTGGGACACTCTGTACAAGCCAACAAGT
CTGGTCTCGCTGGAGTGCCTTTCCCACAGTGCCAAGCATGCTGCACATCC
AGCTCGGCCACTTTCTCTTTAGCTATGGCTCGCAGTAATCAAGAACACTG
GCTAATCCACTACACTCTCCTGGAACAGAGGCTAATCAAGAGGGAGCCCC
CCCACTCCTAATTAAACTGCTGGCCATGTCCGGGGGGCAACCTGCTGGTT
TATAGCACCCGGGAACTTAATTCCCAAAGCCCCCGGTTCCCTTTGATGGG
TGGGCCTTATTACCTGGAGAGGGAACTTTCCCTTCCTGAGCAATTTTTGT
TTCCAGAAAACCACCTCCAAGGGAAACCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_f17.g1 MSMg01no426_f17.g1 CHROMAT_FILE:
MSMg01no426_f17.g1 PHD_FILE: MSMg01no426_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:52 2005
         (448 letters)



>mm_chr4_122723510_122724357
          Length = 848

 Score =  859 bits (444), Expect = 0.0
 Identities = 447/448 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgagagattcctgtttcttcaaacacttgcaagctcctacgttgtttaaaaaaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 actgtgagagattcctgtttcttcaaacacttgcaagctcctacgttgtttaaaaaaggg 589

                                                                       
Query: 61  ggtggagtggggaacccattaggaatattcattctcaactagaataaagagaaagactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggtggagtggggaacccattaggaatattcattctcaactagaataaagagaaagactgt 529

                                                                       
Query: 121 ctcgcagaaagcttcatttttcaacttcatgcataaattcccaaagcacgaagctccggc 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctcgaagaaagcttcatttttcaacttcatgcataaattcccaaagcacgaagctccggc 469

                                                                       
Query: 181 tttactctaatcccagagctattcagaaaggcacctaaactctgggtgagaaataacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttactctaatcccagagctattcagaaaggcacctaaactctgggtgagaaataacact 409

                                                                       
Query: 241 gttcttttaaaaacacattctagaattagttaaaggagttcagaaataacaggtttcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gttcttttaaaaacacattctagaattagttaaaggagttcagaaataacaggtttcttc 349

                                                                       
Query: 301 tgtacaaacagaaggagacttactttcaagtgagcagtacaagcttgtttgggacactct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgtacaaacagaaggagacttactttcaagtgagcagtacaagcttgtttgggacactct 289

                                                                       
Query: 361 gtacaagccaacaagtctggtctcgctggagtgcctttcccacagtgccaagcatgctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtacaagccaacaagtctggtctcgctggagtgcctttcccacagtgccaagcatgctgc 229

                                       
Query: 421 acatccagctcggccactttctctttag 448
           ||||||||||||||||||||||||||||
Sbjct: 228 acatccagctcggccactttctctttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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