BAC Information

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BAC

Clone NameMSMg01-426J12
Chromosome4 (Build37)
Map Location 90,465,291 - 90,465,796
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426J12.T7 (MSMg01no426_j12.b1)MSMg01-426J12.TJ (MSMg01no426_j12.g1)
ACCAG519997AG519998
length797784
length of high quality
(start - end)		511 (37 - 547)525 (69 - 593)
definitionCHROMAT_FILE: MSMg01no426_j12.b1 PHD_FILE: MSMg01no426_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:11 2005CHROMAT_FILE: MSMg01no426_j12.g1 PHD_FILE: MSMg01no426_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCCAT
TTTCTCTATCCAATTTGTGCTGGGAACAAGAAGTGGCCAGTAGATAAATG
TATGCCTGTTTAGTGAATGGCTAGTGAATAAGTGTGTACTTGCATATTGA
AACTGTGACAGAGTTCTCATCCCTGCCTGACAGATCCCATGAAATCATTG
ATACCCCTAGGAATATAACAGGTTGCTAAGTTCACTCCTCCCTACTTCGG
CTGGAGTGACTGTGAAACTTGAAGAGTTTTCTGTGTGATTAGGCTCTGTG
TAAAATGTGCTTTCCCATGTTCACTCCGTACTTCAAGCCCATAAATTATT
AATGTGTGTTATGATGGTTAGAGAAATGTATGAAAACTCACCCAGAATCC
AAAATCCCAAATAAAAGTAAATGGTTAAAAGTGAAAGAGACAAAGGAGAT
AGTTCTATTGGTTTGGTTCGGGTTGAAACATTTCTACTATTCCCTCAGCA
TTGATTTTTAAAGATATGAATGACACAGAGTGTTGAATAATTCAGATTTC
ATTTATTAGTCCACTGACCCTATGCATGGCTTCATAAATATGAAAATAAT
GTCATTCTCCTGCTTTCTTCTGTATAGAAAGGGGAAATGGCTGTGTGTCT
GGCAAAAGCTGTGTGATGTTCCTTCACTCTCTTACGTTGTAAACCCACAT
ATTCTGAATGTCTTACATTTTCAATAAAACTGTTACTATTATCAATTCTT
TCTATTGTCCTCCTTCGTGCACTATTTTTTTTCCCACATAGCTACAC

AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACTTCTTGTGACATTATTCAAACAAATGCT
TGCAACCTTTCCATGCCTTCAGATAAAAATGTTCTCTTAGCTGTAGGTGT
CTGTGTTCTCAGGGCAGTCTAACTTTTGTCACGTTTGACTTGCAGAAATG
GTGCTGACTTGGTACATAGAGTCACCTGGTAGTTCCTCCTATAAGGTATG
CATTTACCCTTTCTAGAAAGACCAGGAGAAGTAAAACACTGCATCTTAGA
CAAAACATAACACCAGATCTTTTAAGAAGACTTGAGAAATTTTGTACCAT
AGCCCTGGGTTTATTTATTCACCTGCTCCAAATGACTCACTCTCTGTCAT
CCAGGTACAGTTCTTTTTGCATCTATAGAGTTGGTCATTTACATATTTGA
ATTGCATTAATAATAAAAATTCAAATGAACTAATCCAGTAATGTCTTTCT
AAACTGGGCTGAGAAGTGTTTTGAAAAGTGAATACAAATTATTTTGCTGC
TTATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTGTTAATACATAA
TACACTCATCCTGGAATAATTTTTATCTTCCCAGGGAACATAGACTTTGA
TTAAAGAAAAATATATGCTTTTTATGAATCTAAAAGTAACACAAGTTAAT
TTTGGCAAATGCAGATGGTCCTATATTATATGGAACAAAGAAAAACAAAA
TCTTATGGAGAAATAAGTTCTCAAATTTATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_j12.b1 MSMg01no426_j12.b1 CHROMAT_FILE:
MSMg01no426_j12.b1 PHD_FILE: MSMg01no426_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:11 2005
         (511 letters)



>mm_chr4_90465086_90465996
          Length = 911

 Score =  940 bits (486), Expect = 0.0
 Identities = 501/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccattttctctatccaatttgtgctgggaacaagaagtggccagtagataaatgt 65
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccattttctccatgcaatttgtgctgggaacaagaagtggccagtagataaatgt 265

                                                                       
Query: 66  atgcctgtttagtgaatggctagtgaataagtgtgtacttgcatattgaaactgtgacag 125
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgcctctttagtgaatggctagtgaataagtgtgtacttgcatattgaaactgtgacag 325

                                                                       
Query: 126 agttctcatccctgcctgacagatcccatgaaatcattgatacccctaggaatataacag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agttctcatccctgcctgacagatcccatgaaatcattgatacccctaggaatataacag 385

                                                                       
Query: 186 gttgctaagttcactcctccctacttcggctggagtgactgtgaaacttgaagagttttc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gttgctaagttcactcctccctacttcggctggagtgactgtgaaacttgaagagttttc 445

                                                                       
Query: 246 tgtgtgattaggctctgtgtaaaatgtgctttcccatgttcactccgtacttcaagccca 305
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 446 tgtgtgattaggctctgtgtaaaatgtgctttcccatgcacactccgtacttcaagccca 505

                                                                       
Query: 306 taaattattaatgtgtgttatgatggttagagaaatgtatgaaaactcacccagaatcca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 taaattattaatgtgtgttatgatggttagagaaatgtatgaaaactcacccagaatcca 565

                                                                       
Query: 366 aaatcccaaataaaagtaaatggttaaaagtgaaagagacaaaggagatagttctattgg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaatcccaaataaaagtaaatggttaaaagtgaaagagacaaaggagatagttctattgg 625

                                                                       
Query: 426 tttggttcgggttgaaacatttctactattccctcagcattgatttttaaagatatgaat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttggttcgggttgaaacatttctactattccctcagcattgatttttaaagatatgaat 685

                                     
Query: 486 gacacagagtgttgaataattcagat 511
           ||||||||||||||||||||||||||
Sbjct: 686 gacacagagtgttgaataattcagat 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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