Query= MSMg01no426_k12.b1 MSMg01no426_k12.b1 CHROMAT_FILE:
MSMg01no426_k12.b1 PHD_FILE: MSMg01no426_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:16 2005
(438 letters)
>mm_chr4_66012706_66013544
Length = 839
Score = 828 bits (428), Expect = 0.0
Identities = 434/436 (99%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 1 aaacagtaccagcccaataatcacaatcaagagatgtaaatctatgaccagatgaacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaacagtaccagcccaataatcacaatcaagagatgtaaatctatgaccagatgaacagt 577
Query: 61 catatggtaaagccaaattttgagataggtataaaacagtatcagtagacacagaaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 catatggtaaagccaaattttgagataggtataaaacagtatcagtagacacagaaatag 517
Query: 121 acacaggacacctatcttgggcttttattgaccttagacagtttgtttcaggtcaaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acacaggacacctatcttgggcttttattgaccttagacagtttgtttcaggtcaaggaa 457
Query: 181 gtacttctttctgagtctcttctatctcctttatcaaatagaaagttaaggtttgtaacc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 456 gtacttctttctgagtctcttctatcccctttatcaaatagaaagttaaggtttgtaacc 397
Query: 241 ctactagtgactccccaacttagcatcctaaatctacttctgtgccatcagattttctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctactagtgactccccaacttagcatcctaaatctacttctgtgccatcagattttctat 337
Query: 301 ggacatcatgacagcaatgacaaaattttgt-aaaaaacatttggagcccccagaactta 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 336 ggacatcatgacagcaatgacaaaattttgtaaaaaaacatttggagcccccagaactta 277
Query: 360 gagcttcaggtattagcttactaatcatcataccagctctatgggataaatgcaatgaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gagcttcaggtattagcttactaatcatcataccagctctatgggataaatgcaatgaat 217
Query: 420 attgtcactccctatg 435
||||||||||||||||
Sbjct: 216 attgtcactccctatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space: 356070
Effective search space used: 356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_k12.g1 MSMg01no426_k12.g1 CHROMAT_FILE:
MSMg01no426_k12.g1 PHD_FILE: MSMg01no426_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:16 2005
(447 letters)
>mm_chr4_65855975_65856821
Length = 847
Score = 857 bits (443), Expect = 0.0
Identities = 446/447 (99%)
Strand = Plus / Plus
Query: 1 tggcttaggaaaaatacaatgaggaaggaatcatagaccctagtgtgtcacttgtttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcttaggaaaaatacaatgaggaaggaatcatagaccctagtgtgtcacttgtttctt 260
Query: 61 ataaactatggaagccaacatagaatccatgcctcacattcccgattgtttaaaaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaactatggaagccaacatagaatccatgcctcacattcccgattgtttaaaaaacaa 320
Query: 121 acaagatggctgcagcagccaaataagctaggcatccttaacttcatttagcaattgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagatggctgcagcagccaaataagctaggcatccttaacttcatttagcaattgagt 380
Query: 181 atactaagcctccaacagggcactctgcccgagttcacaaggttgtttagtggcagagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactaagcctccaacagggcactctgcccgagttcacaaggttgtttagtggcagagca 440
Query: 241 cagatgtgattttagaatctgaatccatgtgctgtaagttgctgtgatcatcctgaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagatgtgattttagaatctgaatccatgtgctgtaagttgctgtgatcatcctgaaatt 500
Query: 301 gtcactgtcataaaaggtatggatggaagatgagaagaccccctcatcctttactcagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcactgtcataaaaggtatggatggaagatgagaagaccccctcatcctttactcagta 560
Query: 361 tctcagtccaggctcctatagccacaaaaacactcctacccctatatcaacagttagcat 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 tctcagtccaggctcctatagccacaaaaacactcctatccctatatcaacagttagcat 620
Query: 421 tatgtcaattatagagatttctgaagt 447
|||||||||||||||||||||||||||
Sbjct: 621 tatgtcaattatagagatttctgaagt 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
