BAC Information

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BAC

Clone NameMSMg01-426P20
Chromosome4 (Build37)
Map Location 22,351,697 - 22,351,950
singlet/doubletsinglet
Overlap geneFbxl4
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379
Downstream genePou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426P20.T7 (MSMg01no426_p20.b1)MSMg01-426P20.TJ (MSMg01no426_p20.g1)
ACCAG520297AG520298
length781835
length of high quality
(start - end)		429 (46 - 474)264 (75 - 338)
definitionCHROMAT_FILE: MSMg01no426_p20.b1 PHD_FILE: MSMg01no426_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:43 2005CHROMAT_FILE: MSMg01no426_p20.g1 PHD_FILE: MSMg01no426_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAAAATTCTAAACTGGAGCCATCCATGACATAAGTACAAAGAA
CTGGGCAGACTGGTGCAGGCCTTGTGTATACTCTTTCATTCTCTGTTCCT
TCATATGAGCTTTGTTCATGGAAATTTAGAGGGCCTTGTTTTTTTGGTGT
CCTCCATTTCTCCAGCTCTTATACTCTTTGTGGTTACTCTTCTATGAGGT
CCCTGAGCAGAAGGATTTGGTGGAGACAATCTAGACATGTTCAGATGCTT
ATAAATCTATGAGTACTATCTGGCTGTAGGGGGTCTATATTTGATCCTAT
CTCCTGCAGGAGGAAGCTTCCCTCTTGATGGTTGAGCAAGGTACTCATCT
ATCAGCATAGCAAAATAGTTTTAGGAGACAGCTCTTCACTACATTGCTTT
TCTTTTTGCACAGTATTATTTGGTTTTACTCTGGGCCCCTGAACTATCTA
GTCTCAGGTTCTAGCTCACTCAAGTGGTGGTAAAGAGGGTTTCATCTTTA
TGGATGGAATTTTAAGTCAAATCAGTTACTGCTTGTTTATTCTCCCAGCT
TTGGGGCTCCATTGGCTTAAATAACTAAAAAACCTTGGTGAATTACTACT
TTTTCAACTCAAGGTTGGAGCTGTATTCCCTTTACTCCCCCTCCCCTTGA
AAATGTGTGACATCTCTTGCCTCAATATGCTGCTATATTTCTTATACGCC
CTCTTTCTTTCCTACTTTTCCCTTTTCATCC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACGTTCCCGTATTACATCTATTAAAA
TGTAGCTCACTATGGGAAACAGAGCTGTCAGTAAAGTGTTTTAAAGTGAA
GTGTGTGGCTACCAGTAAGTTGCTACTACACTGATCTGCACGACTAATGC
ACCTAGGACCTCTTCCAGGTGCTAGCATTCTTTGTAAACTGTTTTTTTTT
TTCCTTTAATTGGTGAAGAGAATAAAACAGTTATTTTTGAATAGATGGAT
GGTTCTTTAATTTAAACTTTTGGGGGGTTGTTTTGNNTNNANAACANNNN
CTGNTTTTGNTTATTAGTTTATTTTANATTTCAGTTATTACAGTATCACA
TGAACTCATGTCCACCCCCCCTGCTATTAAACTTGTTTTCTACTTTGTCT
TCTCTTTTCTGTTTTCCTTTCTCCTGATCTCTTCTCTTTTTCTTCTTTCT
TCGTTTTCTTTCTTTTCCCCGTTCTCCTTTTTTTAATTCTCTATCTTTCC
TTCTCCTTTTTTTTCATCTTCCCTTTCCTCCCCTTTTTCTTCTTTCCTTC
TTCTCTCTATATCTTTTCTTTTTTTTTTCGCCCCTTCTCTTTTTTCTTTT
TGTCTCTTTTTATTTTCCCTTCCTCCTCTCTCTATTATTTCCTTTTTTTT
CTCCCTCCTTCCTCTCTCTCTCCTTTTTTTTTTCCTCCCTTTCTTTTTTT
TCTTCTCTTCCATTTCCTTTCTTGTGTTTATCCCTCCATTCTCTATTCTC
TTCCTTCTCTCGTTTATTTCTCCTTTTACTATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_p20.g1 MSMg01no426_p20.g1 CHROMAT_FILE:
MSMg01no426_p20.g1 PHD_FILE: MSMg01no426_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:43 2005
         (264 letters)



>mm_chr4_22351494_22352153
          Length = 660

 Score =  441 bits (228), Expect = e-128
 Identities = 249/258 (96%), Gaps = 4/258 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttcccgtattacatctattaaaatgtagctcactatgggaaacagagctgtcagtaaagt 63
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttcctgtattacagctattaaaatgtagctcactatgggaaacagagctgtcagtaaagt 263

                                                                       
Query: 64  gttttaaagtgaagtgtgtggctaccagtaagttgctactacactgatctgcacgactaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttttaaagtgaagtgtgtggctaccagtaagttgctactacactgatctgcacgactaa 323

                                                                       
Query: 124 tgcacctaggacctcttccaggtgctagcattctttgtaaactgtttttttttttccttt 183
           ||||||||||||||||||||||||||||||||||||||||| |||||| ||    |||||
Sbjct: 324 tgcacctaggacctcttccaggtgctagcattctttgtaaattgttttatt----ccttt 379

                                                                       
Query: 184 aattggtgaagagaataaaacagttatttttgaatagatggatggttctttaatttaaac 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 aattggtgaagagaataaaacagttatttttgaatggatggatggttctttaatttaaac 439

                             
Query: 244 ttttggggggttgttttg 261
           ||||||||||||||||||
Sbjct: 440 ttttggggggttgttttg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 660
Length adjustment: 9
Effective length of query: 255
Effective length of database: 651
Effective search space:   166005
Effective search space used:   166005
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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