Query= MSMg01no427_m06.b1 MSMg01no427_m06.b1 CHROMAT_FILE:
MSMg01no427_m06.b1 PHD_FILE: MSMg01no427_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:43 2005
(235 letters)
>mm_chr4_47736125_47736759
Length = 635
Score = 427 bits (221), Expect = e-124
Identities = 230/233 (98%), Gaps = 2/233 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttcgctgttc-gacttctgagcatctaggttctaaatttttaaaatatgtctt 62
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcgctgg-cagacttctgagcatctaggttctaaatttttaaaatatgtctt 262
Query: 63 cctagtgctttgggataaaagacttcccatgtcaccaaacaaaggcttcactattcccta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctagtgctttgggataaaagacttcccatgtcaccaaacaaaggcttcactattcccta 322
Query: 123 agaggtctgcatagctcacaaagctagaaagcatctcttaagggaaaacttggacagcaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaggtctgcatagctcacaaagctagaaagcatctcttaagggaaaacttggacagcaa 382
Query: 183 taggctaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taggctaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space: 141476
Effective search space used: 141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no427_m06.g1 MSMg01no427_m06.g1 CHROMAT_FILE:
MSMg01no427_m06.g1 PHD_FILE: MSMg01no427_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:43 2005
(605 letters)
>mm_chr4_47750866_47751870
Length = 1005
Score = 1149 bits (594), Expect = 0.0
Identities = 604/612 (98%), Gaps = 8/612 (1%)
Strand = Plus / Minus
Query: 1 cttacgaagtcactctggtccttagagattagaagtttaagcctggaaggccatacctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 cttacgaagtcactctggtccttagagattagaagtttaagcctggaaggccatacctcg 721
Query: 61 gtaagctttcttcactttggctccccagccatttctgttcctgccagacttaatcctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gtaagctttcttcactttggctccccagccatttctgttcctgccagacttaatcctctg 661
Query: 121 cagtcatatcaaggcaaccatcagtcgaggtcgtctttatttcctctcacatgctacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cagtcatatcaaggcaaccatcagtcgaggtcgtctttatttcctctcacatgctacaga 601
Query: 181 gattaaggccgcctgattttctcatatattccttggcacactgaccacagactcggctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gattaaggccgcctgattttctcatatattccttggcacactgaccacagactcggctct 541
Query: 241 tctccaagctggatgtaaacaatgtttatgcttggctcaaaggtatttattttaaagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tctccaagctggatgtaaacaatgtttatgcttggctcaaaggtatttattttaaagaag 481
Query: 301 aacccatttcaccctggaattacgggatagtcagtgctatcttggatataacaagataat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aacccatttcaccctggaattacgggatagtcagtgctatcttggatataacaagataat 421
Query: 361 tggaatcagtgttttagtaccctggaatcctctcataaatttagagagtaggaaggagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tggaatcagtgttttagtaccctggaatcctctcataaatttagagagtaggaaggagaa 361
Query: 421 gagtaggtttcaagtcctagtatcccagtctcttggtttcacagctagctgtgtggccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gagtaggtttcaagtcctagtatcccagtctcttggtttcacagctagctgtgtggccct 301
Query: 481 gtatgtgggtcatgttcttaccagaaaggtagaaggctattactgctgacctggcccatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtatgtgggtcatgttcttaccagaaaggtagaaggctattactgctgacctggcccatc 241
Query: 541 gctgggcaactggaataaacaatacaag--------agtcttgaagtcaagaggcattga 592
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 240 gctgggcaactggaataaacaatacaagagtcttgaagtcttgaagtcaagaggcattga 181
Query: 593 tgtaggagctac 604
||||||||||||
Sbjct: 180 tgtaggagctac 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
