Query= MSMg01no428_a17.b1 MSMg01no428_a17.b1 CHROMAT_FILE:
MSMg01no428_a17.b1 PHD_FILE: MSMg01no428_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:06 2005
(449 letters)
>mm_chr4_83899387_83900238
Length = 852
Score = 801 bits (414), Expect = 0.0
Identities = 439/448 (97%), Gaps = 3/448 (0%)
Strand = Plus / Minus
Query: 5 gaattctcaactgccagaaagggtttcagaggcttagtgagaaagaatgacattgggtta 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaattctcaactgtgagaaagggtttcagaggcttagtgagaaagaatgacattgggtta 593
Query: 65 aaaacttc-tttcatttataaaatccatccaaatgtataataaagagccctccgtccttc 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaaacttcttttcatttataaaatccatccaaatgtataataaagagccctccgtccttc 533
Query: 124 ttccttaagcttcccttgcttgcagcctactcagggctgtgttgaatcctcactggatat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttccttaagcttcccttgcttgcagcctactcagggctgtgttgaatcctcactggatat 473
Query: 184 ttggggtccaacgtctgcttgagcagaggaaccctggggccaaatcagctaattctttac 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttggggtccaacgtctgcttgaacagaggaaccctggggccaaatcagctaattctttac 413
Query: 244 aattcctattcattttttacaatttctattctgtgtttgttagagaaattatttatattg 303
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 412 aattcctattcattttttaccatttctattctgtgtttgttagagagattatttatattg 353
Query: 304 atctttgttgtgtgtgtgt--attttcaaatcaccgaatgttaaaaattgatcagagaag 361
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atctttgttgtgtgtgtgtgtattttcaaatcaccgaatgttaaaaattgatcagagaag 293
Query: 362 tcttccactgggagagaatggtttttgaaaacactcaaggcaggtttagacaataaaaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tcttccactgggagagaatggtttttgaaaacactcaaggcaggtttagacaataaaaaa 233
Query: 422 ttgtcaacaagtaaatgtgtgtgtgtgt 449
||||||||||||||||| ||||||||||
Sbjct: 232 ttgtcaacaagtaaatgggtgtgtgtgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 852
Length adjustment: 10
Effective length of query: 439
Effective length of database: 842
Effective search space: 369638
Effective search space used: 369638
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_a17.g1 MSMg01no428_a17.g1 CHROMAT_FILE:
MSMg01no428_a17.g1 PHD_FILE: MSMg01no428_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:06 2005
(187 letters)
>mm_chr4_83749259_83749845
Length = 587
Score = 362 bits (187), Expect = e-105
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1 catcttgcccgtccccctgccagcttcatacactgtggttaattttctcctcctttgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcttgcccgtccccctgccagcttcatacactgtggttaattttctcctcctttgatc 260
Query: 61 agacacttcttaaatgtttcaagagatggaaattacatgagttgtctccctccagaaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacacttcttaaatgtttcaagagatggaaattacatgagttgtctccctccagaaccc 320
Query: 121 cgacatctactgatgttgcgggacttgattttctgcctgcgagaccccgaggactttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgacatctactgatgttgcgggacttgattttctgcctgcgagaccccgaggactttttc 380
Query: 181 aagtgtg 187
|||||||
Sbjct: 381 aagtgtg 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
