CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACTTTACATGAACCCTGATACTTCTGGGAAGGCATCTTGAA
TTGGGTTCCTTTTGATTTCCTAGAAATAGAGTATATTTGTGATTGTTATC
TGATAGACTTTTAAAGGCTTTTTTTGATAAAATTATTTTCCAACTTTCTA
CCACATGATCCTTTGGCCTGACTGCTTGCCATGAGTGTCTGGAATTCTGT
TTGTTTATAGAGGATATGTCTCTAAGTACGGAATGGGCAAACGCCTGACA
CTGCTCCCTGGAGTCTTTCTTGTGAGTGAGGAAGTTCAGGAGCCCCTCTG
ATGAGTATTCTTGGAGAAATCTCCTTGGGTAGCTGGGTCTTTCTCCCACG
GGACTGAGGCACCTGAGTGATCCAAAGGATGCATGGAAACTCACATTTGG
CTTGAAAAGCCATTGACTCTAAGCTGTGGCCCTGTCTAGCACACAACCAT
ACCTGGTCTCCCTTTCCCCTGAGGAAGTTCTAGCTCTTATCCTTGCGTTC
TTGAGAATGCCTTTATTTTGTTTTCTCTGACTGTTCCTATATAATGATGT
CTGGTTCCTCTGGCAAATTTTGTAGATAGCTACCCAAGTATCATCCTTCT
AATTAGGAGCATTCGCCTCTTGTGTGATCAACTTAACCCAAAGAACCTTT
CTTCCCGGCCATATTTCTGCCCCCTTCCACATGATAAAAA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTATCTAAAACATGAAATGC
CTACAATTCAGGCTTTATTTTTAGTTCCAGGAAGAACTGAGATCTGTTAC
AACAAAGAACCTCAAATGAACTTCATATTTCTTTAAAACTAAATCTTGTA
ATCGGGTTGGATTTGCATAGCCTAATTTCTTAAATGGGGCCAAGAAGTCT
TTAAATAGCACTCTTTAAGCATCTCTGAAGCATCCTTCCTTCATCCAGTA
AATTTAAAGCAAACTGAAGTGTACTATCTGAGCCACACTGGGGTCAGCAG
GCTGCACATCTAGCAGAGCTCTGACCATAACCTCATGGTAGAAACACATC
AAGCTCGGGAGTCAAAAAGTATACACAAGCACATATACACATGCATATAT
TTCCTCTATATGTAATGCACTTAGGAAATCGAGTCTGTTAGTTCAGTCCT
CAAACATGATATGTTTGAAAAGCCAAACTTAGAATATGTTCAAACTGGAA
TTATTCTACATATAGGGTTCCTGACTTCTTTAAAGTATAATTTCTCTAAG
GAAGAATCACTTGATAGAAAAAGAGACCAAGAATATTTAACACCATAAAT
ACAAAGCATAAAACACAACCATCAGTTAGGATGTGGAATCACGTAGTGGG
ACTTAGTCAGAAAGGCAAACTAAAATACAAGTTCAAGATGAGGCCAGGTG
AC

Query= MSMg01no428_b14.b1 MSMg01no428_b14.b1 CHROMAT_FILE:
MSMg01no428_b14.b1 PHD_FILE: MSMg01no428_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:10 2005
         (488 letters)



>mm_chr4_84803427_84804314
          Length = 888

 Score =  866 bits (448), Expect = 0.0
 Identities = 478/488 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaccctgatacttctgggaaggcatcttgaattgggttccttttgatttcctagaaat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaccttgatacttctgggaaggcatcttgaattgggttccttttgatttcctagaaat 260

                                                                       
Query: 61  agagtatatttgtgattgttatctgatagacttttaaaggctttttttgataaaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagtatatttgtgattgttatctgatagacttttaaaggctttttttgataaaattatt 320

                                                                       
Query: 121 ttccaactttctaccacatgatcctttggcctgactgcttgccatgagtgtctggaattc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaactttgtaccacatgatcctttggcctgactgcttgccatgagtgtctggaattc 380

                                                                       
Query: 181 tgtttgtttatagaggatatgtctctaagtacggaatgggcaaacgcctgacactgctcc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tgtttgtttatagaggatatgtctctaaatacggaatgggcaaacgcctgacactgctcc 440

                                                                       
Query: 241 ctggagtctttcttgtgagtgaggaagttcaggagcccctctgatgagtattcttggaga 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggagtcagccttgtgagtgaggaagttcaggagcccctctgatgagtattcttggaga 500

                                                                       
Query: 301 aatctccttgggtagctgggtctttctcccacgggactgaggcacctgagtgatccaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatctccttgggtagctgggtctttctcccacgggactgaggcacctgagtgatccaaag 560

                                                                       
Query: 361 gatgcatggaaactcacatttggcttgaaaagccattgactctaagctgtggccctgtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 gatgcatggaaactcacatttggcttgaaaagccattgactctaagctgcggccctgtct 620

                                                                       
Query: 421 agcacacaaccatacctggtctccctttcccctgaggaagttctagctcttatccttgcg 480
           |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 agcacacaaccaaacctggcctccctttcccctgaggaagttcaagctcttatccttgcg 680

                   
Query: 481 ttcttgag 488
           ||||||||
Sbjct: 681 ttcttgag 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no428_b14.g1 MSMg01no428_b14.g1 CHROMAT_FILE:
MSMg01no428_b14.g1 PHD_FILE: MSMg01no428_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:10 2005
         (562 letters)



>mm_chr4_84967513_84968474
          Length = 962

 Score = 1048 bits (542), Expect = 0.0
 Identities = 557/562 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttatctaaaacatgaaatgcctacaattcaggctttatttttagttccaggaagaac 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tttttatctaaaacatgaaatacctacaattcaggctttatttttagttccaggaagaac 703

                                                                       
Query: 61  tgagatctgttacaacaaagaacctcaaatgaacttcatatttctttaaaactaaatctt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 taagatctgttacaacaaagaacctcaaatgaacttcatatttctttaaaactaaatctt 643

                                                                       
Query: 121 gtaatcgggttggatttgcatagcctaatttcttaaatggggccaagaagtctttaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtaatcgggttggatttgcatagcctaatttcttaaatggggccaagaagtctttaaata 583

                                                                       
Query: 181 gcactctttaagcatctctgaagcatccttccttcatccagtaaatttaaagcaaactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gcactctttaagcatctctgaagcatccttccttcatccagtaaatttaaagcaaactga 523

                                                                       
Query: 241 agtgtactatctgagccacactggggtcagcaggctgcacatctagcagagctctgacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agtgtactatctgagccacactggggtcagcaggctgcacatctagcagagctctgacca 463

                                                                       
Query: 301 taacctcatggtagaaacacatcaagctcgggagtcaaaaagtatacacaagcacatata 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 462 taacctcatggtagaaacacatcaagctcaggagtcaaaaagtatacacaagcacatata 403

                                                                       
Query: 361 cacatgcatatatttcctctatatgtaatgcacttaggaaatcgagtctgttagttcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cacatgcatatatttcctctatatgtaatgcacttaggaaatcgagtctgttagttcagt 343

                                                                       
Query: 421 cctcaaacatgatatgtttgaaaagccaaacttagaatatgttcaaactggaattattct 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cctcaaaaatgatatgtttgaaaagccaaacttagaatatgttcaaactggaattattct 283

                                                                       
Query: 481 acatatagggttcctgacttctttaaagtataatttctctaaggaagaatcacttgatag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 282 acatatagggttcctgacttctttaaagtataatttctctaaggaagaatcacttgatat 223

                                 
Query: 541 aaaaagagaccaagaatattta 562
           ||||||||||||||||||||||
Sbjct: 222 aaaaagagaccaagaatattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)