TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATTTTACTGCACTGCACAGGTCAACTGTATAAGAGAAATACAC
TATAAAATAAAGCATTTGCATTAATTTTTTGCATCTATGTTGTTGTGGGT
TGATTCTAAATGTTACACAATGCATAAATCACTCAACAATGCATTGTTTA
GAATAATCCACTCATTATGTGATAGTGATTTATGACTATAATTTACTGTG
GTTCATAATCTATTTACAGTTTTAAATATTACAACAAGTATACCTATGGA
AATATTCATATTCTTTCTTTTAAATTTGTGGTTTGATCATAGACACAAGT
TTTTCTATAATAAAATGTTTTATCTATTTTATTCATTTTTATTTTCCATA
ACTTCTTGAATGTACTCTATCCTTGATTATAATATGTCTAATTTGAGTCT
TTCTGGAAGGCTTGTTGTTTCTATTACTATTGTAATCTTCATGTTTTAAC
AATCTCTAGCAAGCCCTTCTTATGCATTCCTCTTCCCTTGATTGTTTAGA
TACAACTCCCACTTTGTGTTTTATGCACGCTAAAATTATCTCCAGAAACT
ACCTTTAGAACATTTATATCCATTACTCTTAACGGGCCACCAATATATTG
AAATCTCATGCCCTACAAAAGTGCACCCATGTCAAATAACCGTTACTTAT
CCAGGCTTACATTCCCTTTTAATAACTAACCATTCCTAAAAACCCTATTT
CTATCGATTT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAAAAGTTGTCCTATATGTAGTAAC
AGTTAATTTCAACTGTCAAATTGATGACTTCCTGAATTTTTTGGGACATG
TCTCTGATGATGCCTATAAGAAATTATCTTCATTTGGATAATTGAGGTGG
AACAACTTGCTCGTTGTGGATGGCACAGTTCCAAGGCAGGAATTCTGGAT
TCATGAACAGAGAACGTGAGCTGAGCATGAGCATTGATCACTCTCATTTT
CCTAACAAACATACAATGATCAGCTTACTCAAGCTCCAGAAGGAGCCTTG
ACTTTTCTGCCATAATAGATTTTACTCTTGAACTGTGAGATGAAATAAGT
TCTCCCTCCCTTGAATTGCTTTTGTTGGGGCATTTTTATCCCAGCAATTG
AAAATTAGGTAGAGCATGCAGCACTAGATATATCATTTATATGCAAATAT
TTGCCTTACACAACAGGATTCATGCGACTGTACCATAGTTCTACATTATG
TATGTGAAAATAACACTTATCTCATGTTACAGTAAGAACACAATACTTGC
AACATAACTTATTTCCTTCTGTTAATTAAGAATTATTATTTTCTTTACAA
AGATCTTTTTTGGCTTCTCAGTTTCCCGCCTTATTATCAAATACTTAGTA
CTTTCTTGGGTGCTTCCACACCAATCGTCCCCGGTTCTTTTTGTTTCTAC
CCTTTGTCTTTTTTCCTTTCCCCCC

Query= MSMg01no428_b19.b1 MSMg01no428_b19.b1 CHROMAT_FILE:
MSMg01no428_b19.b1 PHD_FILE: MSMg01no428_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:11 2005
         (532 letters)



>mm_chr4_110310529_110311460
          Length = 932

 Score =  953 bits (493), Expect = 0.0
 Identities = 520/529 (98%), Gaps = 2/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctattttactgcactgcacaggtcaactgtataagagaaatacactataaaat 64
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatagtaatgcactgcacaggtcaactgtataagagaaatacactataaaat 264

                                                                       
Query: 65  aaagcatttgcattaattttttgcatctatgtt-gttgtgggttgattctaaatgttaca 123
           |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct: 265 aaagcatttgcattaagtttttgcatctatgtttgt-gtgggttgattctaaatgttaca 323

                                                                       
Query: 124 caatgcataaatcactcaacaatgcattgtttagaataatccactcattatgtgatagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caatgcataaatcactcaacaatgcattgtttagaataatccactcattatgtgatagtg 383

                                                                       
Query: 184 atttatgactataatttactgtggttcataatctatttacagttttaaatattacaacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttatgactataatttactgtggttcataatctatttacagttttaaatattacaacaa 443

                                                                       
Query: 244 gtatacctatggaaatattcatattctttcttttaaatttgtggtttgatcatagacaca 303
           ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||
Sbjct: 444 gtatacctatggaaatattcatattctttcacttaaatttatggtttgatcatagacaca 503

                                                                       
Query: 304 agtttttctataataaaatgttttatctattttattcatttttattttccataacttctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtttttctataataaaatgttttatctattttattcatttttattttccataacttctt 563

                                                                       
Query: 364 gaatgtactctatccttgattataatatgtctaatttgagtctttctggaaggcttgttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaatgtactctatccttgattataatatgtctaatttgagtctttctggaaggcttgttg 623

                                                                       
Query: 424 tttctattactattgtaatcttcatgttttaacaatctctagcaagcccttcttatgcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttctattactattgtaatcttcatgttttaacaatctctagcaagcccttcttatgcat 683

                                                            
Query: 484 tcctcttcccttgattgtttagatacaactcccactttgtgttttatgc 532
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcctcttcccttgattgtttagatacaactcccactttgtgttttatgc 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)