BAC Information

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BAC

Clone NameMSMg01-428D14
Chromosome4 (Build37)
Map Location 99,852,701 - 99,852,936
singlet/doubletsinglet
Overlap geneRor1
Upstream geneLOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
Downstream geneUbe2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2, Jak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428D14.T7 (MSMg01no428_d14.b1)MSMg01-428D14.TJ (MSMg01no428_d14.g1)
ACCAG521239AG521240
length7431,120
length of high quality
(start - end)
238 (71 - 308)---
definitionCHROMAT_FILE: MSMg01no428_d14.b1 PHD_FILE: MSMg01no428_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:20 2005CHROMAT_FILE: MSMg01no428_d14.g1 PHD_FILE: MSMg01no428_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCATXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCAAAAAGGACCGCGGA
ATTCTCGACTTACTAACAAATGAGAGAAGGGATCATGCAGGCTAATTTGT
CCTAAAGCTCAAGTAAACTGGGCTGTGTAAAGACTACATCTTTCCAAACT
CGGCAAAACACCACGACTTACTTGCAAGTGCAGTGTGAAGTAACATGGGA
AAACATCACTCTTCTACTAAACACTAACACCCAAAGGGAAGGCCCAATTT
AAATATTTACTCTCCCAGTTTAGCAGTGAATATCCACATGGCATATCCAA
GTAGAGCTTAAATAGATAGTTTGATGCAAGAACAACCATGGGTAACATCC
GATCCAGATGCAAGAAACATAAGCCACATCTACTGTCCTCGAGAATCTCA
CCTAGTGAGGGACCAACACTGTCATGATGTTTGTTTTTACACACGTTCTG
TAGGTGAGGTGACAGATGCTTGGAGGTGGGCGAGAACCACACAGGAACAG
ACACTGTTAGAGTAAGGATTTAAATTGAATCCTATTGTGCTTCAAGGCCT
CAACAGAAAAATCAATCTGTTTTTTGCCTGTTTGCCTGTTTTGCCCTCGT
TTTGTTTTGCTTTAATCTAGACATGAGTGTTTGTTTGTTTGTTTTTGTTT
TGTTTTGCTTTAATCTACACCTTATTGCCTTTCCTTGTCTCGTGTAACCT
TTTCCCCCCCCAGCATTTATTCCCCCACCCACTGTTTACATTA
TCTTTCTGTCTCGTTTATCTTCCGTCCGCGCGTGTATGTCTCTCCCAGTA
GACAGACGACATTTTTAATTAAACGATACTCAGCCGCAGCGAACGCCAAG
ATACATCTTTACCTCCACTCTGCGCTGTACTCCTCTACTTTCCCATCTTA
TACTTCCTATCTCCTCCCTCCCTTATTTTAATATATTTCATACTTACACA
TATATATTTACATGACAGGTTTAACACAGATTAAGCTGATACGATTGGTG
TATAGTTATCTGCTCGTACTGGTAGCTGCGATAAGTGAAGAAGTATCGAC
GCATAACGATACGTGTAATCGTAAATGACGTAGAGAAGTCTAGCAAAAGA
AGATCGGTGCGTGCCGCTGACTTGTCTCTGTCGAGTCAGTTACGTTCGAG
CTATGCGAACTATCCACTCTGAATTGCGTATCTCGTACGTAAGATGTAAC
CTCCTACTTAGATGATCATAACCTTTTGTGCGTGGCGTTAGCAGTATTCG
TTCTACGCAGTCTCCGTTTCTCAGAAGTCACGCATCGTGCGTCGGGGTGT
GTAAGTGACTGACACCGTATAGTTACTGTTTTCGCATTAGAGTGATGATA
CAACAACTACCGTAAACCAGTCAGTATAATATAAACGCACGTAACGTACA
TCTATATACGCCTACTTGAGGACGACATCCAATTACACAAGTGAGACCGC
AGTATGAATATACATAATGATGCATGATACGAATATCGCTATAATACATG
TCTATAGGTGGAGTGCGTGAACATCTCGCATTCACGCATACGGCCGACGC
CGTTACTTCATGATATCGTTATCACAAAATGACACTACATCACAAACTAA
ACTCAAACCGTAACTCATGCGTATAATGAGCACACATTCGATACTCCATT
AACCGCTCTCTGAGATACTAGTGCACAAGACGTAGTAACCACAGTACTCA
GCGACGAGCAGTTTGTCGTCTCATGCAACTACTACGTCCGATGCGTCTAT
ACGTATATGTCGCACTCACGAATCAGGATCGCGTAGGCTTATTTCAGTCT
AGCTGGTACGAGCTAGGGCGTATATGACCGTATAGTTAAGCGAACGTATC
ACATGTGCGCGCAGAAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_d14.b1 MSMg01no428_d14.b1 CHROMAT_FILE:
MSMg01no428_d14.b1 PHD_FILE: MSMg01no428_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:20 2005
         (238 letters)



>mm_chr4_99852501_99853138
          Length = 638

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagagaagggatcatgcaggctaatttgtcctaaagctcaagtaaactgggctgtgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgagagaagggatcatgcaggctaatttgtcctaaagctcaagtaaactgggctgtgtaa 377

                                                                       
Query: 61  agactacatctttccaaactcggcaaaacaccacgacttacttgcaagtgcagtgtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agactacatctttccaaactcggcaaaacaccacgacttacttgcaagtgcagtgtgaag 317

                                                                       
Query: 121 taacatgggaaaacatcactcttctactaaacactaacacccaaagggaaggcccaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 316 taacatgggaaaacatcactcttctactaaacactaacacccaaagggaaggcccgattt 257

                                                                   
Query: 181 aaatatttactctcccagtttagcagtgaatatccacatggcatatccaagtagag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaatatttactctcccagtttagcagtgaatatccacatggcatatccaagtagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)