Query= MSMg01no429_b22.b1 MSMg01no429_b22.b1 CHROMAT_FILE:
MSMg01no429_b22.b1 PHD_FILE: MSMg01no429_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:30 2005
(407 letters)
>mm_chr4_85263205_85264012
Length = 808
Score = 743 bits (384), Expect = 0.0
Identities = 399/404 (98%), Gaps = 1/404 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttaagtgaattctttttggtcataaggtaggtcaggcaaacaattattgtac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaagtgaattctttttggtcataaggtaggtcaggcaaacaattattgtac 264
Query: 65 attgtggccaggaatggcg-ctttactcctgcatacgtacagatgtcccacacatatgaa 123
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtggccaggaatggcgtctttactcctgcatacgtacagatgtcccacacatatgaa 324
Query: 124 aggaagatgcaggatggcacatagcgtcctcaacctgacagctcagactcctacattgtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaagatgcaggatggcacatagcgtcctcaacctgacagctcagactcctacattgtg 384
Query: 184 gagaggtgggtgcaatgaggaccccgagtctttactctttcatgaattttttttccattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaggtgggtgcaatgaggaccccgagtctttactctttcatgaattttttttccattt 444
Query: 244 ttattaggtatttagctaatttacatttccaatgctataccaaaagtcccccatacccac 303
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttattaggtatttagctcatttacatttccaatgctataccaaaagtcccccatacccac 504
Query: 304 ccacccccactcccctacccacccactccccctatttggccctggtgttcccctatactg 363
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ccacccccactcccctacccccccactccccctatttggccctggcgttcccctatactg 564
Query: 364 gggcatataaagcttgcgtgtcccatgggcctctctttccagtg 407
|||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 gggcatataaagtttgcgtgtcccatgggcctctctttccagtg 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space: 318002
Effective search space used: 318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_b22.g1 MSMg01no429_b22.g1 CHROMAT_FILE:
MSMg01no429_b22.g1 PHD_FILE: MSMg01no429_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:30 2005
(475 letters)
>mm_chr4_85429618_85430492
Length = 875
Score = 861 bits (445), Expect = 0.0
Identities = 470/483 (97%), Gaps = 9/483 (1%)
Strand = Plus / Minus
Query: 1 tcgccctgtttgggaataatcgataaaagcctggcttgagatctggttgaaaagagtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcgccctgtttgggaataatcgataaaagcctggcttgagatctggttgaaaagagtcac 552
Query: 61 tctcattaacacaataaagcacaggcttcagacaagcatcatgtgagtcctctgcttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tctcattaacacaataaagcacaggcttcagacaagcatcatgtgagtcctctgcttaga 492
Query: 121 gtgcaagagcacgctggtcccagtgacagttcctaatcccccactgctgaaaagtgactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtgcaagagcacgctggtcccagtgacagttcctaatcccccactgctgaaaagtgactt 432
Query: 181 ccagggaatcaagtcagcttagacagattttccatttaaacggtcaaggattaaaaggag 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 ccagggaatcaagtcagcttagacagattttccatttaaatggtcaaggattaaaaggag 372
Query: 241 ttggttggacaagcgtaactcattcatagaacattccacttcaaatacacattcacatca 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 371 ttggttggacaagcgtaactcattcatagaacattccacttcaaaaacacattcacatca 312
Query: 301 tggtatccttatgaaaataagctgtcttcttagtccctggaacctaaaagcaaaggctga 360
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 tgatatccttatgaaaataagctgtcttcttagtccctggaatctaaaagcaaaggctga 252
Query: 361 cacgaaaccatttttgattaatgcataacatagttggaactacacttcatc--------t 412
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 251 cacgaaaccatttttgattaatgcataacatagttggaactacacttcatccctctgtat 192
Query: 413 ttctgaacttctgtgatctctgtgtcacataatgcagtttgcagaactggatctccctct 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 191 ttctgaacttctgtgatctctgtgtcacataatgcagtttgcagaactggatctcc-tct 133
Query: 473 aca 475
|||
Sbjct: 132 aca 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
