BAC Information

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BAC

Clone NameMSMg01-429G16
Chromosome4 (Build37)
Map Location 140,174,139 - 140,363,896
singlet/doubletdoublet
Overlap geneArhgef10l, Rcc2, Padi6, Padi4, Padi3
Upstream geneAldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
Downstream genePadi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429G16.T7 (MSMg01no429_g16.b1)MSMg01-429G16.TJ (MSMg01no429_g16.g1)
ACCAG522151AG522152
length744754
length of high quality
(start - end)
448 (62 - 509)172 (75 - 246)
definitionCHROMAT_FILE: MSMg01no429_g16.b1 PHD_FILE: MSMg01no429_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:54 2005CHROMAT_FILE: MSMg01no429_g16.g1 PHD_FILE: MSMg01no429_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,363,449 - 140,363,896)(140,174,139 - 140,174,310)
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTCCAAGAGGATCCGCGGAATTCAGCC
CTTTCCGCAGAGAAAGAAAGTTTGGTTCATACTGGGAAGAAGGAAAGTTC
TGGAAGAGCCACAGTTGCAGGCTGAAATGAGACAAGAAGGCTGGCTGAAA
GCAACCTTCAGACATTCTCCTAACATGTGACTCACATCTAGGTGTCTGTT
CCCTAGGGCTGCTTGGCCCAGCTGTCATCTTTATAATGTGTCATATATGA
GAGTGGAAAGCAGTCCCCAGGCTGGCCCGGTGGTGGCTGCTGGAGCTCAC
CCATCCCTTCTTCTGAATAGGGAAACTGAGGTCCGGTGGGTGAAAGGATC
TAACCAGCTTAAGGAAGCAAGTTAAGATAGAAACCAGGCCTTGAGACCCA
AAAAGCCCATGACATATTGTAGTGGGAACCCAGTTCCCAAGGTCCCGTGA
GGCTGGGGGAAGCTCAGGGCCCCTTGCGTGTTCAGGTCGACATCTGGGAG
ACCTGGGAAGAGTCAGGTGTGCTCTGTCTGCATGGCTGCAGTAGTCTCAG
AGTGGCCACGGGCTTCTTAGCTCTCTTAAACCCGCCCAGTCCCCTTGGAG
CGAGCCCCAGACGCTGCGGAAAATCCAGAACGTGGGCGGCCATGATCGAA
ACCCCTGTCCCACCCGGGAGCGCTTTCCTCACTATGAAATTGTCCTTTAC
TTCCTCCAGGAGAGCTTTTTTCCCCGGGCAAGGGGTCTTCTAAN
ACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTTCCAGGGGATCTGATGCCCTCTT
CTGGCCCCTGTGGGCACCAGGTACACAAAAGCACAAGCATGCATGCTTTC
ATGCTTGTATAAGGACATGCAAGTAAGCAAACACACTCATGCATGCACAC
ACACACACACAAATTAAACACAGAGGCAGAGGTAGGAGGCAGGAGAGGCA
GTAGAGGCAGGAGAGGCAGGAGAGGTAGGAGAGGCACGAGAGGCAGGAGA
GGCAGGACAGGCATTATATTTTTGATAGGCACGACGCAGGAGGCAGGAGG
CAGGAGTTATTACTCACCACACAGGAGGCAGGAGGCACGACGCATTATGC
AGGAGATGTACAGGTATATCTCCGAGTTTGAAGCCAGCCTGGTCTACACA
GCCAGTTCTAGGACATTTATGCCTCACCCGACCCACTCCGTCTCACAACC
TATAATTGCCTCCTCTGAACCACCCCCCCACACCCTCTATTTTGTTCCAC
AGCCTGCTTCATTTGTTCCTTTCCCCCTCCTTATTCCCTGCACACCCCTT
TTTTTACTTTTCCCCCCCCCCCCTAACAATCTCGCCTTCTCCACGGACTC
CCCCTCCTTGGTTCCCCCTTTATCTTTCCCGCTTATCGCCCCCTCCCCCC
CCCCTTTTACCCATTTTCCCCCGACCATCCCCGTTATACCCACCCCCTCT
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_g16.b1 MSMg01no429_g16.b1 CHROMAT_FILE:
MSMg01no429_g16.b1 PHD_FILE: MSMg01no429_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:54 2005
         (448 letters)



>mm_chr4_140363249_140364096
          Length = 848

 Score =  866 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagaaagtttggttcatactgggaagaaggaaagttctggaagagccacagttgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaaagaaagtttggttcatactgggaagaaggaaagttctggaagagccacagttgcagg 589

                                                                       
Query: 61  ctgaaatgagacaagaaggctggctgaaagcaaccttcagacattctcctaacatgtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctgaaatgagacaagaaggctggctgaaagcaaccttcagacattctcctaacatgtgac 529

                                                                       
Query: 121 tcacatctaggtgtctgttccctagggctgcttggcccagctgtcatctttataatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcacatctaggtgtctgttccctagggctgcttggcccagctgtcatctttataatgtgt 469

                                                                       
Query: 181 catatatgagagtggaaagcagtccccaggctggcccggtggtggctgctggagctcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 catatatgagagtggaaagcagtccccaggctggcccggtggtggctgctggagctcacc 409

                                                                       
Query: 241 catcccttcttctgaatagggaaactgaggtccggtgggtgaaaggatctaaccagctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 catcccttcttctgaatagggaaactgaggtccggtgggtgaaaggatctaaccagctta 349

                                                                       
Query: 301 aggaagcaagttaagatagaaaccaggccttgagacccaaaaagcccatgacatattgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aggaagcaagttaagatagaaaccaggccttgagacccaaaaagcccatgacatattgta 289

                                                                       
Query: 361 gtgggaacccagttcccaaggtcccgtgaggctgggggaagctcagggccccttgcgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtgggaacccagttcccaaggtcccgtgaggctgggggaagctcagggccccttgcgtgt 229

                                       
Query: 421 tcaggtcgacatctgggagacctgggaa 448
           ||||||||||||||||||||||||||||
Sbjct: 228 tcaggtcgacatctgggagacctgggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_g16.g1 MSMg01no429_g16.g1 CHROMAT_FILE:
MSMg01no429_g16.g1 PHD_FILE: MSMg01no429_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:54 2005
         (172 letters)



>mm_chr4_140173939_140174510
          Length = 572

 Score =  333 bits (172), Expect = 4e-96
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaggggatctgatgccctcttctggcccctgtgggcaccaggtacacaaaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccaggggatctgatgccctcttctggcccctgtgggcaccaggtacacaaaagcac 260

                                                                       
Query: 61  aagcatgcatgctttcatgcttgtataaggacatgcaagtaagcaaacacactcatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcatgcatgctttcatgcttgtataaggacatgcaagtaagcaaacacactcatgcat 320

                                                               
Query: 121 gcacacacacacacacaaattaaacacagaggcagaggtaggaggcaggaga 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacacacacacacaaattaaacacagaggcagaggtaggaggcaggaga 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)