BAC Information

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BAC

Clone NameMSMg01-429I01
Chromosome4 (Build37)
Map Location 113,556,803 - 113,557,181
singlet/doubletsinglet
Overlap geneLOC242627
Upstream geneLOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I01.T7 (MSMg01no429_i01.b1)MSMg01-429I01.TJ (MSMg01no429_i01.g1)
ACCAG522215AG522216
length743754
length of high quality
(start - end)
545 (41 - 585)328 (68 - 395)
definitionCHROMAT_FILE: MSMg01no429_i01.b1 PHD_FILE: MSMg01no429_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005CHROMAT_FILE: MSMg01no429_i01.g1 PHD_FILE: MSMg01no429_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
CACCATGTCAAAATCTTGCTTAAAAGCACTGCAAAAATGTTTTAGATAAT
TTCATCAGGGCATAAGTTTTCATTACCTACATGGAAGTTTGTTGGCTGCT
TCTAACACAGATACTTCAGAAAAATCGTTAATGAAAAAGTATCTAATCCA
TTATGCTGCCTGTGAATGAAGGACATAACACAATTCAAGTGGCCATGCAT
AGGAGAATATTTGATGTCTGTGAACAGATAACTAGATACTGTGCATGAGA
ATAGGGTGTCATGCATAGTAATGTGTTGCAGTAAATCACCAACACAAATA
TGTTACAGTGGGGAACAATGGGATATGCACAGACAGGCTTGTCTCCATTC
AAGCTGAGGTCTGAACCCCAGTACCAGTTCGCAATGTTGAGGGGGTCAAG
TTGCTTTACACAGCCTGAAGGCCATCTGGGTAAGAGTGAAAATCATCTGG
CAGTTCTCTTGTGTCCACCTGCCTAGAGCACAGAAACTCTGACAGGATAT
GGGCTCTTTCCCTCTACCCTCTTCCCCTAAACCCCACTAAAGCCCAACAT
CTCAGTAATGAAAAGACAACTAACTTAATATGTATACATTCTGTGCACCT
AGATTGTGCATATCCTACCTAACACTATACTAGCATCCTCCACATCTGTG
AACCCTTTTAGTACTTGAAGCTTCTCCCTTCCATGTGCCTCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAATAGACTGGACCAGAAAAGAAATTCCTCCT
GACACATAATAGTCAGAACAAAAAATGCACTAAATAAAGATAGAATACAG
GCTCCCAATGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTG
CAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTC
TTGACTCTAGCTGTATATGTATCAAAAGATGGCCTAGTCGGCCATCACTC
GAAAGAGAGGCCCCCTGGACACGCAAACTTTATATGCCCCAGTACAGGGG
AACGCCAGGGCCAAAAAGGGGGAGTGGGGAGGTAGGGGAGTTNNNTTNNN
NNTNTNTTTCCCTTTTTTTTNNNTTTTTNNTTTTTTTTTTTTTTTNTTTT
TTCCTTTNTTTTTTTTTTTTCCCTCTTTCTTCTCCTCCCCTCTTTTTTCC
CCCCCCTCCCTTCTTCCCCCCCTCTCCTCCCTCTTTCTCTCCCTTTTCTC
CCTCCCCCTCCCCTCCCCCCTTCCTCTCCCCTTCTCCCCCTCTTCTCTCT
CTTTTTCTCCTTCCTCTCCCCTTTTTCTTTTCCCCCTCTCCTTCCCCTCC
TCCTTTTCTTTTCCCTCCTTCCCCCCCTTTCTCCCCTCTTCCCTCCCCCC
CTCTTCCCTCTCCTTTCTTTTTTCCTCTTCTCCCCTCTCTCCCCCCCCTC
TCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i01.b1 MSMg01no429_i01.b1 CHROMAT_FILE:
MSMg01no429_i01.b1 PHD_FILE: MSMg01no429_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:01 2005
         (545 letters)



>mm_chr4_113556522_113557466
          Length = 945

 Score =  545 bits (282), Expect = e-159
 Identities = 357/382 (93%), Gaps = 6/382 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattccttcaccatgtcaaaatcttgc-ttaaaagcactgcaaaaatgttttagataat 60
           |||||||||||||||||||||||||| | |||||| ||||| |||||  |||||||||||
Sbjct: 660 gaattccttcaccatgtcaaaatctt-cattaaaaacactggaaaaacattttagataat 602

                                                                       
Query: 61  ttcatcagggcataagttttcattacctacatggaagtttgttggctgcttctaacacag 120
           |||||||  ||| |||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 601 ttcatcactgcacaagttttcattacctagatgaaaatttgttggctgcttctaacacag 542

                                                                       
Query: 121 atacttcagaaaaatcgttaatgaaaaagtatctaatccattatgctgcctgtgaatgaa 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atacttcagaaaaatctttaatgaaaaagtatctaatccattatgctgcctgtgaatgaa 482

                                                                       
Query: 181 ggacataacacaattcaagtggccatgcataggagaatatttgatgtctgtgaacagata 240
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 481 ggacataacacaattcaagtggccatgcataggagagtatttgatgtctgtgaatagata 422

                                                                       
Query: 241 actagatactgtgcatgagaatag-ggtgtcatgcatagtaatgtgttgcagtaaatcac 299
           |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct: 421 actagatactgtgcatgagaat-gtggtatcatgcatagtaatgtgttgcagtaaatcac 363

                                                                       
Query: 300 caacacaaatatgtta-cagtggggaacaatgggatatgcacagacaggcttgtctccat 358
           ||| |||||||||||| | |||||||||||| || |||||||||||| | ||||||||||
Sbjct: 362 caaaacaaatatgttatc-gtggggaacaataggctatgcacagacaagtttgtctccat 304

                                 
Query: 359 tcaagctgaggtctgaacccca 380
           ||||||||||||||||||||||
Sbjct: 303 tcaagctgaggtctgaacccca 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)