BAC Information

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BAC

Clone NameMSMg01-429I04
Chromosome4 (Build37)
Map Location 151,464,049 - 151,633,316
singlet/doubletdoublet
Overlap genePlekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980
Downstream geneGpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I04.T7 (MSMg01no429_i04.b1)MSMg01-429I04.TJ (MSMg01no429_i04.g1)
ACCAG522221AG522222
length751713
length of high quality
(start - end)		495 (62 - 556)152 (76 - 227)
definitionCHROMAT_FILE: MSMg01no429_i04.b1 PHD_FILE: MSMg01no429_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005CHROMAT_FILE: MSMg01no429_i04.g1 PHD_FILE: MSMg01no429_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,464,049 - 151,464,541)(151,633,165 - 151,633,316)
sequence
GCGGCCGCTAAACGACTCCTAAATGCACAAAGGCGCGGAATTCATTTGTA
TACCGAGAGAATCATGAGGCCTGTTTCCTGGGCTTTGGATGGGCTCTGTG
TGAAACCCTGAGAGTGAGACATCACAGGGCTTCACACCAGACTCTGCCCC
ACAAATGCAATGTGTGTAGCTCACTGGGAGGGAGGGCAGGGGATTGTCAT
GGGTGTCCTCAGCACTCCTACAAAATAGCCCTAGGGCAGTGGCTGACCAC
AGCTCTTAGCTGGGCCTCCTTGTGTCAAGCATTCTGGTCAAAGTCTGCTC
AGTACCTTGGGTCACGAGGGGACATGGTGTAGGACTGATACTGGATCACC
GGCCTCCATACTGAAGGATTTGGAAATCCTCAAACCCAGGAGCCAATCCT
AGCAGTTTGCTGAGAATACTGTGCAGGCCCCACTATGTGTCTCGTGCCGG
CAGCCCACCCTAGTTGTTAGAGCCAGCTCCGTCCCAGTGGAATGACTGAC
ACATTGAGCAGCTGACTTGTCAAGTCAGGACTTCCTGTTCTCAGGGCCCC
CTTTTCCAAGCCTCTCCCAGGAAGAAAGGGAGGCTATGCCCTTCCGTTTG
GTTCAAAGGGCCTGGACAGGTAAGCCCGTTTTGATTCCATATGGAGACAT
TTTTAAATTTGGAGCTATTCCCTTCCCCCTCCCGTCCCGAACCCCTTCTT
CCTTGTGCCAAAGTATACTCCCCTAAAAAGCCGAAGCTCCTAAGAATTTC
C

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGACAACAAATGGACATGTGTCTA
TCTGCTGTCACCCATGAGACCCCATTTCCTACCACTTGCCATGGCAAATT
CCTGGTTGCTCACGGTTTAATGTCTAAGTCAGAAATCCAATGCTTTTAAC
CCCAAGTTTAAGTCAGAAATGTCTGGTNCCTGAAGNNACCTNAAGACCAG
GNTGNNATACAAAAAGCAGGGGAAAGGGTCTTGTGGCCCAGGGATGCCAC
ACCACAACAGAAACACCTCCCAAAATTTTGGGGGGCCCTTTTNNNNNTTN
CTTTTTTTTTTTTTTTTTTATAAAAAAAAGGCCGCCCCCCCCAAAGTGGG
CCCCCCCCAAAACACCTCTCCCCCCGCCGTAATAAATTCTCTCCCTCCCC
CCCCAACCGCGGGGTTTTTGGGGTCGCGGTCCCTACAAAAAAACAAATAA
TAAACCGGTCCCCGCCTCCCCCCNNAAAATTGNCTNTNCGCAGCCACCCC
CNNNACGTGCCCNCNTTTTNNNNTCTCCCCNNTTTTTAGNTTTCGAGAAG
AGGGAAGGGAAAAAAGNNNNNNAGGGGCGAGTGTTTTTCAGTNNTTGTGT
TGCNTTACACTCCCCCCCCCCNNNTNGAGGGTCNNNNCCCCATAGGGTCC
TCACATGCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i04.b1 MSMg01no429_i04.b1 CHROMAT_FILE:
MSMg01no429_i04.b1 PHD_FILE: MSMg01no429_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:01 2005
         (495 letters)



>mm_chr4_151463849_151464743
          Length = 895

 Score =  922 bits (477), Expect = 0.0
 Identities = 489/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaggcctgtttcctgggctttggatgggctctgtgtgaaaccctgagagtgagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgaggcctgtttcctgggctttggatgggctctgtgtgaaaccctgagagtgagaca 260

                                                                       
Query: 61  tcacagggcttcacaccagactctgccccacaaatgcaatgtgtgtagctcactgggagg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagggcttcacaccagactctgacccacaaatgcaatgtgtgtagctcactgggagg 320

                                                                       
Query: 121 gagggcaggggattgtcatgggtgtcctcagcactcctacaaaatagccctagggcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagggcaggggattgtcatgggtgtcctcagcactcctacaaaatagccctagggcagtg 380

                                                                       
Query: 181 gctgaccacagctcttagctgggcctccttgtgtcaagcattctggtcaaagtctgctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgaccacagctcttagctgggcctccttgtgtcaagcattctggtcaaagtctgctca 440

                                                                       
Query: 241 gtaccttgggtcacgaggggacatggtgtaggactgatactggatcaccggcctccatac 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 gtaccttgggtcacgaggggacatggtgtaggactgatactggaccaccggcctccatac 500

                                                                       
Query: 301 tgaaggatttggaaatcctcaaacccaggagccaatcctagcagtttgctgagaatactg 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tgaaggatttggaaatcctcaaacccaggagctaatcctagcagtttgctgagaatactg 560

                                                                       
Query: 361 tgcaggccccactatgtgtctcgtgccggcagcccaccctagttgttagagccagctccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaggccccactatgtgtctcgtgccggcagcccaccctagttgttagagccagctccg 620

                                                                       
Query: 421 tcccagtggaatgactgacacattgagcagctgacttgtcaagtcaggacttcctgttct 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 tcccagtggaatgactgacacattgagcagctgacttgccaagtcaggacttcctgttct 680

                        
Query: 481 cagggcccccttt 493
           |||||||||||||
Sbjct: 681 cagggcccccttt 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_i04.g1 MSMg01no429_i04.g1 CHROMAT_FILE:
MSMg01no429_i04.g1 PHD_FILE: MSMg01no429_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:01 2005
         (152 letters)



>mm_chr4_151632965_151633516
          Length = 552

 Score =  286 bits (148), Expect = 3e-82
 Identities = 151/152 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacaacaaatggacatgtgtctatctgctgtcacccatgagaccccatttcctaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagacaacaaatggacatgtgtctatctgctgtcacccatgagaccccatttcctaccac 293

                                                                       
Query: 61  ttgccatggcaaattcctggttgctcacggtttaatgtctaagtcagaaatccaatgctt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttgccatggcaaactcctggttgctcacggtttaatgtctaagtcagaaatccaatgctt 233

                                           
Query: 121 ttaaccccaagtttaagtcagaaatgtctggt 152
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ttaaccccaagtttaagtcagaaatgtctggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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